Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03520 and BPHYT_RS03525 are separated by 73 nucleotides BPHYT_RS03525 and BPHYT_RS03530 are separated by 19 nucleotides BPHYT_RS03530 and BPHYT_RS03535 are separated by 189 nucleotides BPHYT_RS03535 and BPHYT_RS03540 are separated by 378 nucleotides
BPHYT_RS03520: BPHYT_RS03520 - ATP--cobalamin adenosyltransferase, at 794,604 to 795,158
_RS03520
BPHYT_RS03525: BPHYT_RS03525 - XRE family transcriptional regulator, at 795,232 to 795,564
_RS03525
BPHYT_RS03530: BPHYT_RS03530 - hypothetical protein, at 795,584 to 795,931
_RS03530
BPHYT_RS03535: BPHYT_RS03535 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 796,121 to 797,194
_RS03535
BPHYT_RS03540: BPHYT_RS03540 - peptidase C69, at 797,573 to 799,039
_RS03540
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 795.156 kb on + strand at 795.175 kb on - strand at 795.579 kb on + strand at 795.696 kb on + strand, within BPHYT_RS03530 at 795.696 kb on + strand, within BPHYT_RS03530 at 795.696 kb on + strand, within BPHYT_RS03530 at 795.697 kb on - strand, within BPHYT_RS03530 at 795.723 kb on + strand, within BPHYT_RS03530 at 795.723 kb on + strand, within BPHYT_RS03530 at 795.723 kb on + strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.902 kb on + strand at 796.008 kb on + strand at 796.025 kb on + strand at 796.026 kb on - strand at 796.092 kb on + strand at 796.093 kb on - strand at 796.110 kb on + strand at 796.123 kb on - strand at 796.123 kb on - strand at 796.737 kb on + strand, within BPHYT_RS03535 at 796.738 kb on - strand, within BPHYT_RS03535 at 796.912 kb on - strand, within BPHYT_RS03535 at 796.977 kb on + strand, within BPHYT_RS03535 at 797.083 kb on - strand at 797.083 kb on - strand, within BPHYT_RS03535 at 797.083 kb on - strand, within BPHYT_RS03535 at 797.215 kb on + strand at 797.324 kb on - strand at 797.324 kb on - strand at 797.365 kb on + strand at 797.471 kb on + strand at 797.614 kb on + strand at 797.687 kb on - strand at 797.710 kb on - strand at 797.710 kb on - strand at 797.787 kb on + strand, within BPHYT_RS03540 at 797.788 kb on - strand, within BPHYT_RS03540 at 797.788 kb on - strand, within BPHYT_RS03540 at 797.860 kb on - strand, within BPHYT_RS03540 at 797.860 kb on - strand, within BPHYT_RS03540 at 797.860 kb on - strand, within BPHYT_RS03540 at 797.919 kb on + strand, within BPHYT_RS03540 at 797.919 kb on + strand, within BPHYT_RS03540 at 797.920 kb on - strand, within BPHYT_RS03540 at 797.920 kb on - strand, within BPHYT_RS03540 at 797.920 kb on - strand, within BPHYT_RS03540 at 797.955 kb on + strand, within BPHYT_RS03540 at 798.024 kb on + strand, within BPHYT_RS03540 at 798.024 kb on + strand, within BPHYT_RS03540 at 798.024 kb on + strand, within BPHYT_RS03540 at 798.024 kb on + strand, within BPHYT_RS03540 at 798.025 kb on - strand, within BPHYT_RS03540 at 798.025 kb on - strand, within BPHYT_RS03540
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 795,156 + +0.5 795,175 - -0.0 795,579 + -0.1 795,696 + BPHYT_RS03530 0.32 +1.7 795,696 + BPHYT_RS03530 0.32 -1.4 795,696 + BPHYT_RS03530 0.32 +0.4 795,697 - BPHYT_RS03530 0.32 -2.5 795,723 + BPHYT_RS03530 0.40 -1.2 795,723 + BPHYT_RS03530 0.40 -0.5 795,723 + BPHYT_RS03530 0.40 -2.2 795,724 - BPHYT_RS03530 0.40 -0.3 795,724 - BPHYT_RS03530 0.40 +2.1 795,724 - BPHYT_RS03530 0.40 -0.5 795,724 - BPHYT_RS03530 0.40 +0.2 795,724 - BPHYT_RS03530 0.40 +0.7 795,724 - BPHYT_RS03530 0.40 -0.9 795,902 + +0.7 796,008 + +0.9 796,025 + -0.6 796,026 - -0.5 796,092 + +1.2 796,093 - -0.9 796,110 + -0.3 796,123 - -1.2 796,123 - +0.3 796,737 + BPHYT_RS03535 0.57 -1.1 796,738 - BPHYT_RS03535 0.57 +0.9 796,912 - BPHYT_RS03535 0.74 -0.5 796,977 + BPHYT_RS03535 0.80 -1.4 797,083 - -0.5 797,083 - BPHYT_RS03535 0.90 +0.1 797,083 - BPHYT_RS03535 0.90 -2.0 797,215 + +1.1 797,324 - +0.0 797,324 - -0.7 797,365 + +1.7 797,471 + -0.3 797,614 + -0.0 797,687 - +0.7 797,710 - +0.0 797,710 - +1.5 797,787 + BPHYT_RS03540 0.15 -0.8 797,788 - BPHYT_RS03540 0.15 -0.4 797,788 - BPHYT_RS03540 0.15 -0.2 797,860 - BPHYT_RS03540 0.20 +1.4 797,860 - BPHYT_RS03540 0.20 +0.4 797,860 - BPHYT_RS03540 0.20 -0.6 797,919 + BPHYT_RS03540 0.24 +0.2 797,919 + BPHYT_RS03540 0.24 -0.3 797,920 - BPHYT_RS03540 0.24 +0.5 797,920 - BPHYT_RS03540 0.24 -1.1 797,920 - BPHYT_RS03540 0.24 -0.6 797,955 + BPHYT_RS03540 0.26 +1.2 798,024 + BPHYT_RS03540 0.31 +1.0 798,024 + BPHYT_RS03540 0.31 +0.8 798,024 + BPHYT_RS03540 0.31 +0.3 798,024 + BPHYT_RS03540 0.31 -2.9 798,025 - BPHYT_RS03540 0.31 -1.0 798,025 - BPHYT_RS03540 0.31 +0.1
Or see this region's nucleotide sequence