Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03465 and BPHYT_RS03470 are separated by 787 nucleotides BPHYT_RS03470 and BPHYT_RS03475 are separated by 429 nucleotides
BPHYT_RS03465: BPHYT_RS03465 - hypothetical protein, at 780,904 to 781,650
_RS03465
BPHYT_RS03470: BPHYT_RS03470 - LysR family transcriptional regulator, at 782,438 to 783,397
_RS03470
BPHYT_RS03475: BPHYT_RS03475 - catalase, at 783,827 to 785,281
_RS03475
Position (kb) 782
783
784 Strain fitness (log2 ratio) -2
-1
0
1
2 at 781.443 kb on + strand, within BPHYT_RS03465 at 781.528 kb on - strand, within BPHYT_RS03465 at 781.707 kb on - strand at 781.890 kb on + strand at 782.082 kb on - strand at 782.082 kb on - strand at 782.212 kb on - strand at 782.212 kb on - strand at 782.258 kb on + strand at 782.258 kb on + strand at 782.289 kb on + strand at 782.388 kb on + strand at 782.394 kb on + strand at 782.397 kb on - strand at 782.400 kb on + strand at 782.400 kb on + strand at 782.459 kb on + strand at 782.459 kb on + strand at 782.460 kb on - strand at 782.460 kb on - strand at 782.730 kb on + strand, within BPHYT_RS03470 at 782.732 kb on + strand, within BPHYT_RS03470 at 782.733 kb on - strand, within BPHYT_RS03470 at 782.735 kb on - strand, within BPHYT_RS03470 at 783.166 kb on + strand, within BPHYT_RS03470 at 783.167 kb on - strand, within BPHYT_RS03470 at 783.395 kb on + strand at 783.395 kb on + strand at 783.527 kb on - strand at 783.709 kb on + strand at 783.710 kb on - strand at 783.768 kb on + strand at 783.769 kb on - strand at 783.804 kb on + strand at 783.838 kb on + strand at 783.839 kb on - strand at 783.839 kb on - strand at 784.034 kb on - strand, within BPHYT_RS03475 at 784.034 kb on - strand, within BPHYT_RS03475 at 784.172 kb on + strand, within BPHYT_RS03475 at 784.280 kb on + strand, within BPHYT_RS03475
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 781,443 + BPHYT_RS03465 0.72 +0.1 781,528 - BPHYT_RS03465 0.84 -0.8 781,707 - -1.2 781,890 + -0.0 782,082 - -1.5 782,082 - +0.5 782,212 - -0.8 782,212 - +0.1 782,258 + -1.1 782,258 + -1.6 782,289 + -1.8 782,388 + +1.3 782,394 + -1.6 782,397 - +1.5 782,400 + +2.4 782,400 + +0.4 782,459 + -0.4 782,459 + +1.3 782,460 - +1.4 782,460 - +0.4 782,730 + BPHYT_RS03470 0.30 +1.0 782,732 + BPHYT_RS03470 0.31 +0.6 782,733 - BPHYT_RS03470 0.31 +1.1 782,735 - BPHYT_RS03470 0.31 +0.5 783,166 + BPHYT_RS03470 0.76 +1.4 783,167 - BPHYT_RS03470 0.76 +1.7 783,395 + -2.1 783,395 + +0.4 783,527 - +0.2 783,709 + +0.1 783,710 - -0.5 783,768 + +1.9 783,769 - -0.0 783,804 + -0.1 783,838 + +1.8 783,839 - +0.6 783,839 - +1.0 784,034 - BPHYT_RS03475 0.14 -1.0 784,034 - BPHYT_RS03475 0.14 -2.0 784,172 + BPHYT_RS03475 0.24 -1.9 784,280 + BPHYT_RS03475 0.31 -0.4
Or see this region's nucleotide sequence