Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02875 and BPHYT_RS02880 are separated by 29 nucleotides BPHYT_RS02880 and BPHYT_RS02885 are separated by 39 nucleotides
BPHYT_RS02875: BPHYT_RS02875 - adenine glycosylase, at 641,219 to 642,280
_RS02875
BPHYT_RS02880: BPHYT_RS02880 - ATP-dependent protease, at 642,310 to 642,945
_RS02880
BPHYT_RS02885: BPHYT_RS02885 - glmZ(sRNA)-inactivating NTPase, at 642,985 to 643,878
_RS02885
Position (kb) 642
643 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 641.367 kb on - strand, within BPHYT_RS02875 at 641.456 kb on + strand, within BPHYT_RS02875 at 641.457 kb on - strand, within BPHYT_RS02875 at 641.457 kb on - strand, within BPHYT_RS02875 at 641.460 kb on - strand, within BPHYT_RS02875 at 641.460 kb on - strand, within BPHYT_RS02875 at 642.335 kb on + strand at 642.336 kb on - strand at 642.766 kb on + strand, within BPHYT_RS02880 at 642.767 kb on - strand, within BPHYT_RS02880 at 642.894 kb on + strand at 642.894 kb on + strand at 642.895 kb on - strand at 642.930 kb on + strand at 642.930 kb on + strand at 642.937 kb on - strand at 642.937 kb on - strand at 642.994 kb on + strand at 642.994 kb on + strand at 642.995 kb on - strand at 643.135 kb on + strand, within BPHYT_RS02885 at 643.136 kb on - strand, within BPHYT_RS02885 at 643.139 kb on + strand, within BPHYT_RS02885 at 643.139 kb on + strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.140 kb on - strand, within BPHYT_RS02885 at 643.286 kb on + strand, within BPHYT_RS02885 at 643.286 kb on + strand, within BPHYT_RS02885 at 643.287 kb on - strand, within BPHYT_RS02885 at 643.444 kb on - strand, within BPHYT_RS02885 at 643.639 kb on + strand, within BPHYT_RS02885 at 643.640 kb on - strand, within BPHYT_RS02885 at 643.640 kb on - strand, within BPHYT_RS02885 at 643.640 kb on - strand, within BPHYT_RS02885 at 643.799 kb on + strand at 643.799 kb on + strand at 643.800 kb on - strand at 643.802 kb on + strand at 643.802 kb on + strand at 643.853 kb on - strand at 643.854 kb on + strand at 643.854 kb on + strand at 643.855 kb on - strand at 643.870 kb on + strand at 643.870 kb on + strand at 643.907 kb on + strand at 643.907 kb on + strand at 643.907 kb on + strand at 643.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 641,367 - BPHYT_RS02875 0.14 -1.9 641,456 + BPHYT_RS02875 0.22 +0.2 641,457 - BPHYT_RS02875 0.22 -2.1 641,457 - BPHYT_RS02875 0.22 +0.2 641,460 - BPHYT_RS02875 0.23 -0.9 641,460 - BPHYT_RS02875 0.23 +0.2 642,335 + +0.1 642,336 - -1.0 642,766 + BPHYT_RS02880 0.72 +1.8 642,767 - BPHYT_RS02880 0.72 -2.0 642,894 + -1.4 642,894 + -0.0 642,895 - -1.9 642,930 + +0.9 642,930 + +0.1 642,937 - -2.0 642,937 - -0.2 642,994 + -3.2 642,994 + +0.3 642,995 - +2.0 643,135 + BPHYT_RS02885 0.17 -2.4 643,136 - BPHYT_RS02885 0.17 -5.0 643,139 + BPHYT_RS02885 0.17 +1.4 643,139 + BPHYT_RS02885 0.17 -0.4 643,140 - BPHYT_RS02885 0.17 -2.1 643,140 - BPHYT_RS02885 0.17 -1.0 643,140 - BPHYT_RS02885 0.17 -0.2 643,140 - BPHYT_RS02885 0.17 +0.5 643,286 + BPHYT_RS02885 0.34 -1.4 643,286 + BPHYT_RS02885 0.34 +0.4 643,287 - BPHYT_RS02885 0.34 -1.7 643,444 - BPHYT_RS02885 0.51 -1.1 643,639 + BPHYT_RS02885 0.73 -0.4 643,640 - BPHYT_RS02885 0.73 -0.3 643,640 - BPHYT_RS02885 0.73 +2.4 643,640 - BPHYT_RS02885 0.73 -0.6 643,799 + -0.5 643,799 + -0.8 643,800 - -1.8 643,802 + -0.5 643,802 + +0.7 643,853 - -2.8 643,854 + -1.9 643,854 + -1.8 643,855 - -1.5 643,870 + +0.7 643,870 + -3.0 643,907 + -0.1 643,907 + +1.1 643,907 + -0.6 643,908 - -0.3
Or see this region's nucleotide sequence