Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02705 and BPHYT_RS02710 are separated by 52 nucleotides BPHYT_RS02710 and BPHYT_RS02715 are separated by 11 nucleotides BPHYT_RS02715 and BPHYT_RS02720 are separated by 13 nucleotides
BPHYT_RS02705: BPHYT_RS02705 - membrane protein, at 606,395 to 608,269
_RS02705
BPHYT_RS02710: BPHYT_RS02710 - hypothetical protein, at 608,322 to 608,507
_RS02710
BPHYT_RS02715: BPHYT_RS02715 - dioxygenase, at 608,519 to 609,331
_RS02715
BPHYT_RS02720: BPHYT_RS02720 - MarR family transcriptional regulator, at 609,345 to 610,271
_RS02720
Position (kb) 608
609 Strain fitness (log2 ratio) -2
-1
0
1
2 at 607.370 kb on - strand, within BPHYT_RS02705 at 608.333 kb on - strand at 608.339 kb on - strand at 608.352 kb on - strand, within BPHYT_RS02710 at 608.499 kb on + strand at 608.717 kb on + strand, within BPHYT_RS02715 at 608.718 kb on - strand, within BPHYT_RS02715 at 608.783 kb on + strand, within BPHYT_RS02715 at 608.784 kb on - strand, within BPHYT_RS02715 at 608.813 kb on + strand, within BPHYT_RS02715 at 608.813 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.861 kb on + strand, within BPHYT_RS02715 at 609.011 kb on - strand, within BPHYT_RS02715 at 609.187 kb on + strand, within BPHYT_RS02715 at 609.226 kb on + strand, within BPHYT_RS02715 at 609.227 kb on - strand, within BPHYT_RS02715 at 609.264 kb on - strand at 609.346 kb on + strand at 609.347 kb on - strand at 609.347 kb on - strand at 609.355 kb on - strand at 609.474 kb on + strand, within BPHYT_RS02720 at 609.475 kb on - strand, within BPHYT_RS02720 at 609.488 kb on + strand, within BPHYT_RS02720 at 609.488 kb on + strand, within BPHYT_RS02720 at 609.488 kb on + strand, within BPHYT_RS02720 at 609.488 kb on + strand, within BPHYT_RS02720
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 607,370 - BPHYT_RS02705 0.52 -1.1 608,333 - +0.0 608,339 - -2.0 608,352 - BPHYT_RS02710 0.16 -1.6 608,499 + +0.7 608,717 + BPHYT_RS02715 0.24 +1.2 608,718 - BPHYT_RS02715 0.24 +0.9 608,783 + BPHYT_RS02715 0.32 +2.7 608,784 - BPHYT_RS02715 0.33 +0.2 608,813 + BPHYT_RS02715 0.36 +0.1 608,813 + BPHYT_RS02715 0.36 -0.4 608,840 + BPHYT_RS02715 0.39 -0.9 608,840 + BPHYT_RS02715 0.39 -0.6 608,840 + BPHYT_RS02715 0.39 -0.3 608,840 + BPHYT_RS02715 0.39 +0.9 608,840 + BPHYT_RS02715 0.39 +1.2 608,841 - BPHYT_RS02715 0.40 -0.6 608,841 - BPHYT_RS02715 0.40 -0.9 608,841 - BPHYT_RS02715 0.40 -0.0 608,841 - BPHYT_RS02715 0.40 -2.7 608,841 - BPHYT_RS02715 0.40 -0.5 608,861 + BPHYT_RS02715 0.42 -1.1 609,011 - BPHYT_RS02715 0.61 -0.0 609,187 + BPHYT_RS02715 0.82 -0.6 609,226 + BPHYT_RS02715 0.87 +0.4 609,227 - BPHYT_RS02715 0.87 +0.2 609,264 - +0.1 609,346 + -1.7 609,347 - +1.2 609,347 - -0.5 609,355 - -0.1 609,474 + BPHYT_RS02720 0.14 -1.4 609,475 - BPHYT_RS02720 0.14 -1.1 609,488 + BPHYT_RS02720 0.15 +1.1 609,488 + BPHYT_RS02720 0.15 +0.6 609,488 + BPHYT_RS02720 0.15 -0.8 609,488 + BPHYT_RS02720 0.15 -0.8
Or see this region's nucleotide sequence