Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01955 and BPHYT_RS01960 overlap by 1 nucleotides BPHYT_RS01960 and BPHYT_RS01965 are separated by 77 nucleotides BPHYT_RS01965 and BPHYT_RS01970 are separated by 149 nucleotides
BPHYT_RS01955: BPHYT_RS01955 - hypothetical protein, at 442,953 to 443,750
_RS01955
BPHYT_RS01960: BPHYT_RS01960 - cytochrome C, at 443,750 to 444,097
_RS01960
BPHYT_RS01965: BPHYT_RS01965 - tRNA-Ala, at 444,175 to 444,250
_RS01965
BPHYT_RS01970: BPHYT_RS01970 - methyl-accepting chemotaxis protein, at 444,400 to 446,157
_RS01970
Position (kb) 444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 443.356 kb on - strand, within BPHYT_RS01955 at 443.446 kb on - strand, within BPHYT_RS01955 at 443.542 kb on - strand, within BPHYT_RS01955 at 443.542 kb on - strand, within BPHYT_RS01955 at 443.542 kb on - strand, within BPHYT_RS01955 at 443.936 kb on + strand, within BPHYT_RS01960 at 443.936 kb on + strand, within BPHYT_RS01960 at 443.936 kb on + strand, within BPHYT_RS01960 at 443.937 kb on - strand, within BPHYT_RS01960 at 444.156 kb on + strand at 444.182 kb on + strand at 444.182 kb on + strand at 444.183 kb on - strand, within BPHYT_RS01965 at 444.281 kb on - strand at 444.321 kb on + strand at 445.086 kb on + strand, within BPHYT_RS01970 at 445.086 kb on + strand, within BPHYT_RS01970 at 445.087 kb on - strand, within BPHYT_RS01970
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 443,356 - BPHYT_RS01955 0.51 -0.3 443,446 - BPHYT_RS01955 0.62 +1.3 443,542 - BPHYT_RS01955 0.74 +0.6 443,542 - BPHYT_RS01955 0.74 -0.2 443,542 - BPHYT_RS01955 0.74 +0.4 443,936 + BPHYT_RS01960 0.53 +0.7 443,936 + BPHYT_RS01960 0.53 +0.9 443,936 + BPHYT_RS01960 0.53 +1.8 443,937 - BPHYT_RS01960 0.54 +0.2 444,156 + -0.9 444,182 + +0.1 444,182 + -0.8 444,183 - BPHYT_RS01965 0.11 +0.9 444,281 - -0.4 444,321 + -0.8 445,086 + BPHYT_RS01970 0.39 -2.3 445,086 + BPHYT_RS01970 0.39 +1.3 445,087 - BPHYT_RS01970 0.39 -2.9
Or see this region's nucleotide sequence