Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01925

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01915 and BPHYT_RS01920 are separated by 61 nucleotidesBPHYT_RS01920 and BPHYT_RS01925 are separated by 90 nucleotidesBPHYT_RS01925 and BPHYT_RS01930 overlap by 4 nucleotides BPHYT_RS01915: BPHYT_RS01915 - cation diffusion facilitator family transporter, at 436,231 to 437,487 _RS01915 BPHYT_RS01920: BPHYT_RS01920 - AsnC family transcriptional regulator, at 437,549 to 438,007 _RS01920 BPHYT_RS01925: BPHYT_RS01925 - exonuclease, at 438,098 to 438,727 _RS01925 BPHYT_RS01930: BPHYT_RS01930 - hypothetical protein, at 438,724 to 439,368 _RS01930 Position (kb) 438 439Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 437.152 kb on - strand, within BPHYT_RS01915at 437.152 kb on - strand, within BPHYT_RS01915at 437.230 kb on + strand, within BPHYT_RS01915at 437.258 kb on + strand, within BPHYT_RS01915at 437.372 kb on + strandat 437.372 kb on + strandat 437.373 kb on - strandat 437.373 kb on - strandat 437.655 kb on + strand, within BPHYT_RS01920at 437.656 kb on - strand, within BPHYT_RS01920at 437.691 kb on + strand, within BPHYT_RS01920at 437.691 kb on + strand, within BPHYT_RS01920at 437.692 kb on - strand, within BPHYT_RS01920at 437.716 kb on - strandat 437.797 kb on + strand, within BPHYT_RS01920at 437.797 kb on + strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.996 kb on - strandat 438.095 kb on + strandat 438.096 kb on - strandat 438.099 kb on + strandat 438.390 kb on + strand, within BPHYT_RS01925at 438.391 kb on - strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.636 kb on + strand, within BPHYT_RS01925at 438.707 kb on + strandat 438.707 kb on + strandat 438.707 kb on + strandat 438.707 kb on + strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.712 kb on - strandat 438.712 kb on - strandat 438.750 kb on - strandat 438.780 kb on + strandat 438.781 kb on - strandat 438.972 kb on + strand, within BPHYT_RS01930at 438.972 kb on + strand, within BPHYT_RS01930at 438.973 kb on - strand, within BPHYT_RS01930at 438.989 kb on + strand, within BPHYT_RS01930at 438.989 kb on + strand, within BPHYT_RS01930at 438.989 kb on + strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 439.401 kb on + strandat 439.401 kb on + strandat 439.401 kb on + strandat 439.401 kb on + strandat 439.402 kb on - strandat 439.412 kb on - strandat 439.537 kb on - strandat 439.538 kb on + strandat 439.538 kb on + strandat 439.539 kb on - strandat 439.539 kb on - strandat 439.539 kb on - strandat 439.622 kb on + strandat 439.623 kb on - strandat 439.655 kb on + strandat 439.715 kb on + strandat 439.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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437,152 - BPHYT_RS01915 0.73 +0.2
437,152 - BPHYT_RS01915 0.73 +0.5
437,230 + BPHYT_RS01915 0.79 -1.9
437,258 + BPHYT_RS01915 0.82 +0.9
437,372 + -2.3
437,372 + -0.6
437,373 - -1.7
437,373 - +0.1
437,655 + BPHYT_RS01920 0.23 -0.4
437,656 - BPHYT_RS01920 0.23 -0.2
437,691 + BPHYT_RS01920 0.31 +0.5
437,691 + BPHYT_RS01920 0.31 +0.7
437,692 - BPHYT_RS01920 0.31 +0.8
437,716 - -1.2
437,797 + BPHYT_RS01920 0.54 +1.0
437,797 + BPHYT_RS01920 0.54 +0.5
437,798 - BPHYT_RS01920 0.54 -0.6
437,798 - BPHYT_RS01920 0.54 +0.4
437,798 - BPHYT_RS01920 0.54 -1.0
437,798 - BPHYT_RS01920 0.54 +0.3
437,798 - BPHYT_RS01920 0.54 +0.1
437,996 - -1.2
438,095 + +1.3
438,096 - -0.5
438,099 + -0.6
438,390 + BPHYT_RS01925 0.46 -0.1
438,391 - BPHYT_RS01925 0.47 -0.0
438,400 + BPHYT_RS01925 0.48 -1.0
438,400 + BPHYT_RS01925 0.48 +0.4
438,400 + BPHYT_RS01925 0.48 +0.5
438,400 + BPHYT_RS01925 0.48 -1.1
438,400 + BPHYT_RS01925 0.48 -0.3
438,400 + BPHYT_RS01925 0.48 -1.2
438,400 + BPHYT_RS01925 0.48 -0.4
438,401 - BPHYT_RS01925 0.48 +1.4
438,401 - BPHYT_RS01925 0.48 +0.2
438,401 - BPHYT_RS01925 0.48 -3.1
438,401 - BPHYT_RS01925 0.48 +0.4
438,401 - BPHYT_RS01925 0.48 +0.3
438,401 - BPHYT_RS01925 0.48 -0.1
438,401 - BPHYT_RS01925 0.48 +0.3
438,401 - BPHYT_RS01925 0.48 -1.1
438,401 - BPHYT_RS01925 0.48 +0.1
438,401 - BPHYT_RS01925 0.48 +0.0
438,402 + BPHYT_RS01925 0.48 +0.4
438,402 + BPHYT_RS01925 0.48 -1.7
438,402 + BPHYT_RS01925 0.48 +1.7
438,402 + BPHYT_RS01925 0.48 +0.1
438,402 + BPHYT_RS01925 0.48 +0.8
438,402 + BPHYT_RS01925 0.48 -0.8
438,402 + BPHYT_RS01925 0.48 -1.9
438,402 + BPHYT_RS01925 0.48 -1.1
438,403 - BPHYT_RS01925 0.48 +0.5
438,403 - BPHYT_RS01925 0.48 -2.4
438,403 - BPHYT_RS01925 0.48 -0.1
438,403 - BPHYT_RS01925 0.48 +0.3
438,403 - BPHYT_RS01925 0.48 -0.3
438,403 - BPHYT_RS01925 0.48 +0.4
438,403 - BPHYT_RS01925 0.48 +0.2
438,403 - BPHYT_RS01925 0.48 -0.5
438,403 - BPHYT_RS01925 0.48 -0.3
438,403 - BPHYT_RS01925 0.48 +0.6
438,403 - BPHYT_RS01925 0.48 +0.2
438,475 - BPHYT_RS01925 0.60 -0.8
438,475 - BPHYT_RS01925 0.60 +1.1
438,475 - BPHYT_RS01925 0.60 -0.3
438,636 + BPHYT_RS01925 0.85 +0.5
438,707 + -0.5
438,707 + -0.4
438,707 + +1.3
438,707 + +0.6
438,708 - -2.1
438,708 - -0.2
438,708 - -0.6
438,708 - +0.5
438,708 - -1.0
438,708 - -1.0
438,712 - +0.4
438,712 - +0.1
438,750 - -0.9
438,780 + -1.0
438,781 - +0.0
438,972 + BPHYT_RS01930 0.38 -0.4
438,972 + BPHYT_RS01930 0.38 -0.6
438,973 - BPHYT_RS01930 0.39 -3.6
438,989 + BPHYT_RS01930 0.41 -2.0
438,989 + BPHYT_RS01930 0.41 -1.3
438,989 + BPHYT_RS01930 0.41 -1.4
438,990 - BPHYT_RS01930 0.41 -0.6
438,990 - BPHYT_RS01930 0.41 -0.8
438,990 - BPHYT_RS01930 0.41 -0.4
438,990 - BPHYT_RS01930 0.41 -2.3
439,401 + -1.2
439,401 + -0.1
439,401 + +0.2
439,401 + -0.1
439,402 - +2.0
439,412 - +0.3
439,537 - -0.1
439,538 + -1.0
439,538 + +0.9
439,539 - -0.3
439,539 - -1.4
439,539 - +0.2
439,622 + -1.0
439,623 - -0.7
439,655 + -0.3
439,715 + -0.5
439,716 - -0.6

Or see this region's nucleotide sequence