Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01910 and BPHYT_RS01915 are separated by 330 nucleotides BPHYT_RS01915 and BPHYT_RS01920 are separated by 61 nucleotides BPHYT_RS01920 and BPHYT_RS01925 are separated by 90 nucleotides
BPHYT_RS01910: BPHYT_RS01910 - H-NS histone, at 435,598 to 435,900
_RS01910
BPHYT_RS01915: BPHYT_RS01915 - cation diffusion facilitator family transporter, at 436,231 to 437,487
_RS01915
BPHYT_RS01920: BPHYT_RS01920 - AsnC family transcriptional regulator, at 437,549 to 438,007
_RS01920
BPHYT_RS01925: BPHYT_RS01925 - exonuclease, at 438,098 to 438,727
_RS01925
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 435.238 kb on + strand at 435.263 kb on + strand at 435.263 kb on + strand at 435.263 kb on + strand at 435.343 kb on + strand at 435.898 kb on + strand at 435.899 kb on - strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.985 kb on + strand at 436.100 kb on - strand at 436.287 kb on + strand at 436.288 kb on - strand at 436.288 kb on - strand at 436.468 kb on + strand, within BPHYT_RS01915 at 436.468 kb on + strand, within BPHYT_RS01915 at 436.469 kb on - strand, within BPHYT_RS01915 at 436.477 kb on - strand, within BPHYT_RS01915 at 436.544 kb on + strand, within BPHYT_RS01915 at 436.545 kb on - strand, within BPHYT_RS01915 at 436.545 kb on - strand, within BPHYT_RS01915 at 436.596 kb on + strand, within BPHYT_RS01915 at 436.596 kb on + strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.620 kb on - strand, within BPHYT_RS01915 at 436.655 kb on - strand, within BPHYT_RS01915 at 436.756 kb on - strand, within BPHYT_RS01915 at 436.926 kb on + strand, within BPHYT_RS01915 at 437.038 kb on + strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.152 kb on - strand, within BPHYT_RS01915 at 437.152 kb on - strand, within BPHYT_RS01915 at 437.230 kb on + strand, within BPHYT_RS01915 at 437.258 kb on + strand, within BPHYT_RS01915 at 437.372 kb on + strand at 437.372 kb on + strand at 437.373 kb on - strand at 437.373 kb on - strand at 437.655 kb on + strand, within BPHYT_RS01920 at 437.656 kb on - strand, within BPHYT_RS01920 at 437.691 kb on + strand, within BPHYT_RS01920 at 437.691 kb on + strand, within BPHYT_RS01920 at 437.692 kb on - strand, within BPHYT_RS01920 at 437.716 kb on - strand at 437.797 kb on + strand, within BPHYT_RS01920 at 437.797 kb on + strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.996 kb on - strand at 438.095 kb on + strand at 438.096 kb on - strand at 438.099 kb on + strand at 438.390 kb on + strand, within BPHYT_RS01925 at 438.391 kb on - strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.475 kb on - strand, within BPHYT_RS01925 at 438.475 kb on - strand, within BPHYT_RS01925 at 438.475 kb on - strand, within BPHYT_RS01925
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 435,238 + +0.1 435,263 + -0.3 435,263 + -0.4 435,263 + -0.7 435,343 + -0.5 435,898 + +2.7 435,899 - -2.4 435,956 + +0.1 435,956 + +0.7 435,985 + -0.8 436,100 - -0.8 436,287 + +0.9 436,288 - +0.1 436,288 - -0.7 436,468 + BPHYT_RS01915 0.19 -0.4 436,468 + BPHYT_RS01915 0.19 -1.1 436,469 - BPHYT_RS01915 0.19 -1.0 436,477 - BPHYT_RS01915 0.20 +0.3 436,544 + BPHYT_RS01915 0.25 -1.5 436,545 - BPHYT_RS01915 0.25 -1.6 436,545 - BPHYT_RS01915 0.25 -1.2 436,596 + BPHYT_RS01915 0.29 +0.2 436,596 + BPHYT_RS01915 0.29 -0.2 436,597 - BPHYT_RS01915 0.29 +0.5 436,597 - BPHYT_RS01915 0.29 -2.6 436,597 - BPHYT_RS01915 0.29 -0.1 436,597 - BPHYT_RS01915 0.29 -0.0 436,620 - BPHYT_RS01915 0.31 -0.9 436,655 - BPHYT_RS01915 0.34 +0.2 436,756 - BPHYT_RS01915 0.42 -0.3 436,926 + BPHYT_RS01915 0.55 -1.9 437,038 + BPHYT_RS01915 0.64 -0.6 437,039 - BPHYT_RS01915 0.64 -0.7 437,039 - BPHYT_RS01915 0.64 -0.2 437,039 - BPHYT_RS01915 0.64 -0.4 437,039 - BPHYT_RS01915 0.64 -0.7 437,039 - BPHYT_RS01915 0.64 -0.1 437,039 - BPHYT_RS01915 0.64 -0.4 437,152 - BPHYT_RS01915 0.73 +0.2 437,152 - BPHYT_RS01915 0.73 +0.5 437,230 + BPHYT_RS01915 0.79 -1.9 437,258 + BPHYT_RS01915 0.82 +0.9 437,372 + -2.3 437,372 + -0.6 437,373 - -1.7 437,373 - +0.1 437,655 + BPHYT_RS01920 0.23 -0.4 437,656 - BPHYT_RS01920 0.23 -0.2 437,691 + BPHYT_RS01920 0.31 +0.5 437,691 + BPHYT_RS01920 0.31 +0.7 437,692 - BPHYT_RS01920 0.31 +0.8 437,716 - -1.2 437,797 + BPHYT_RS01920 0.54 +1.0 437,797 + BPHYT_RS01920 0.54 +0.5 437,798 - BPHYT_RS01920 0.54 -0.6 437,798 - BPHYT_RS01920 0.54 +0.4 437,798 - BPHYT_RS01920 0.54 -1.0 437,798 - BPHYT_RS01920 0.54 +0.3 437,798 - BPHYT_RS01920 0.54 +0.1 437,996 - -1.2 438,095 + +1.3 438,096 - -0.5 438,099 + -0.6 438,390 + BPHYT_RS01925 0.46 -0.1 438,391 - BPHYT_RS01925 0.47 -0.0 438,400 + BPHYT_RS01925 0.48 -1.0 438,400 + BPHYT_RS01925 0.48 +0.4 438,400 + BPHYT_RS01925 0.48 +0.5 438,400 + BPHYT_RS01925 0.48 -1.1 438,400 + BPHYT_RS01925 0.48 -0.3 438,400 + BPHYT_RS01925 0.48 -1.2 438,400 + BPHYT_RS01925 0.48 -0.4 438,401 - BPHYT_RS01925 0.48 +1.4 438,401 - BPHYT_RS01925 0.48 +0.2 438,401 - BPHYT_RS01925 0.48 -3.1 438,401 - BPHYT_RS01925 0.48 +0.4 438,401 - BPHYT_RS01925 0.48 +0.3 438,401 - BPHYT_RS01925 0.48 -0.1 438,401 - BPHYT_RS01925 0.48 +0.3 438,401 - BPHYT_RS01925 0.48 -1.1 438,401 - BPHYT_RS01925 0.48 +0.1 438,401 - BPHYT_RS01925 0.48 +0.0 438,402 + BPHYT_RS01925 0.48 +0.4 438,402 + BPHYT_RS01925 0.48 -1.7 438,402 + BPHYT_RS01925 0.48 +1.7 438,402 + BPHYT_RS01925 0.48 +0.1 438,402 + BPHYT_RS01925 0.48 +0.8 438,402 + BPHYT_RS01925 0.48 -0.8 438,402 + BPHYT_RS01925 0.48 -1.9 438,402 + BPHYT_RS01925 0.48 -1.1 438,403 - BPHYT_RS01925 0.48 +0.5 438,403 - BPHYT_RS01925 0.48 -2.4 438,403 - BPHYT_RS01925 0.48 -0.1 438,403 - BPHYT_RS01925 0.48 +0.3 438,403 - BPHYT_RS01925 0.48 -0.3 438,403 - BPHYT_RS01925 0.48 +0.4 438,403 - BPHYT_RS01925 0.48 +0.2 438,403 - BPHYT_RS01925 0.48 -0.5 438,403 - BPHYT_RS01925 0.48 -0.3 438,403 - BPHYT_RS01925 0.48 +0.6 438,403 - BPHYT_RS01925 0.48 +0.2 438,475 - BPHYT_RS01925 0.60 -0.8 438,475 - BPHYT_RS01925 0.60 +1.1 438,475 - BPHYT_RS01925 0.60 -0.3
Or see this region's nucleotide sequence