Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01905 and BPHYT_RS01910 are separated by 398 nucleotides BPHYT_RS01910 and BPHYT_RS01915 are separated by 330 nucleotides
BPHYT_RS01905: BPHYT_RS01905 - pyridoxamine 5'-phosphate oxidase, at 434,537 to 435,199
_RS01905
BPHYT_RS01910: BPHYT_RS01910 - H-NS histone, at 435,598 to 435,900
_RS01910
BPHYT_RS01915: BPHYT_RS01915 - cation diffusion facilitator family transporter, at 436,231 to 437,487
_RS01915
Position (kb) 435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 434.704 kb on + strand, within BPHYT_RS01905 at 434.705 kb on - strand, within BPHYT_RS01905 at 434.705 kb on - strand, within BPHYT_RS01905 at 434.844 kb on - strand, within BPHYT_RS01905 at 434.873 kb on + strand, within BPHYT_RS01905 at 434.873 kb on + strand, within BPHYT_RS01905 at 434.874 kb on - strand, within BPHYT_RS01905 at 434.874 kb on - strand, within BPHYT_RS01905 at 434.880 kb on + strand, within BPHYT_RS01905 at 434.881 kb on - strand, within BPHYT_RS01905 at 434.929 kb on + strand, within BPHYT_RS01905 at 434.929 kb on + strand, within BPHYT_RS01905 at 435.238 kb on + strand at 435.263 kb on + strand at 435.263 kb on + strand at 435.263 kb on + strand at 435.343 kb on + strand at 435.898 kb on + strand at 435.899 kb on - strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.985 kb on + strand at 436.100 kb on - strand at 436.287 kb on + strand at 436.288 kb on - strand at 436.288 kb on - strand at 436.468 kb on + strand, within BPHYT_RS01915 at 436.468 kb on + strand, within BPHYT_RS01915 at 436.469 kb on - strand, within BPHYT_RS01915 at 436.477 kb on - strand, within BPHYT_RS01915 at 436.544 kb on + strand, within BPHYT_RS01915 at 436.545 kb on - strand, within BPHYT_RS01915 at 436.545 kb on - strand, within BPHYT_RS01915 at 436.596 kb on + strand, within BPHYT_RS01915 at 436.596 kb on + strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.620 kb on - strand, within BPHYT_RS01915 at 436.655 kb on - strand, within BPHYT_RS01915 at 436.756 kb on - strand, within BPHYT_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 434,704 + BPHYT_RS01905 0.25 +0.1 434,705 - BPHYT_RS01905 0.25 -0.6 434,705 - BPHYT_RS01905 0.25 +1.8 434,844 - BPHYT_RS01905 0.46 +0.9 434,873 + BPHYT_RS01905 0.51 -0.2 434,873 + BPHYT_RS01905 0.51 +0.3 434,874 - BPHYT_RS01905 0.51 -0.5 434,874 - BPHYT_RS01905 0.51 -0.0 434,880 + BPHYT_RS01905 0.52 -0.2 434,881 - BPHYT_RS01905 0.52 -0.2 434,929 + BPHYT_RS01905 0.59 +1.7 434,929 + BPHYT_RS01905 0.59 -2.9 435,238 + +0.1 435,263 + -0.3 435,263 + -0.4 435,263 + -0.7 435,343 + -0.5 435,898 + +2.7 435,899 - -2.4 435,956 + +0.1 435,956 + +0.7 435,985 + -0.8 436,100 - -0.8 436,287 + +0.9 436,288 - +0.1 436,288 - -0.7 436,468 + BPHYT_RS01915 0.19 -0.4 436,468 + BPHYT_RS01915 0.19 -1.1 436,469 - BPHYT_RS01915 0.19 -1.0 436,477 - BPHYT_RS01915 0.20 +0.3 436,544 + BPHYT_RS01915 0.25 -1.5 436,545 - BPHYT_RS01915 0.25 -1.6 436,545 - BPHYT_RS01915 0.25 -1.2 436,596 + BPHYT_RS01915 0.29 +0.2 436,596 + BPHYT_RS01915 0.29 -0.2 436,597 - BPHYT_RS01915 0.29 +0.5 436,597 - BPHYT_RS01915 0.29 -2.6 436,597 - BPHYT_RS01915 0.29 -0.1 436,597 - BPHYT_RS01915 0.29 -0.0 436,620 - BPHYT_RS01915 0.31 -0.9 436,655 - BPHYT_RS01915 0.34 +0.2 436,756 - BPHYT_RS01915 0.42 -0.3
Or see this region's nucleotide sequence