Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01300

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
296,278	-				-0.5
296,292	-				+0.7
296,307	+				+0.3
296,308	-				+0.3
296,335	+				+0.7
296,437	+				-0.3
296,460	+				-0.3
296,460	+				+1.1
296,461	-				-0.0
296,480	+				+1.1
296,639	-		BPHYT_RS01295	0.32	-0.4
296,747	+		BPHYT_RS01295	0.48	-1.7
296,747	+		BPHYT_RS01295	0.48	-3.2
296,748	-		BPHYT_RS01295	0.48	-0.3
296,819	+		BPHYT_RS01295	0.59	+0.7
296,826	+		BPHYT_RS01295	0.60	-0.8
297,059	+				-0.7
297,094	+				+0.8
297,193	-				+0.2
297,196	-				-0.0
297,339	-		BPHYT_RS01300	0.22	-0.8
297,542	+		BPHYT_RS01300	0.51	-0.7
297,672	-		BPHYT_RS01300	0.70	-1.0
297,672	-		BPHYT_RS01300	0.70	+1.4
297,811	-				-0.3
297,864	+				-1.7
297,864	+				-0.6
297,864	+				-0.9
297,865	-				+0.1
297,897	+				-1.0
297,907	+				-0.3
297,976	-				+3.7
297,993	+				-0.4
298,045	+				+0.5
298,082	-				-0.6
298,085	+				-1.0
298,085	+				+0.2
298,085	+				-1.7
298,086	-				+1.7
298,086	-				+0.3
298,139	+		BPHYT_RS01305	0.10	+0.7
298,171	-		BPHYT_RS01305	0.13	+1.3
298,173	-		BPHYT_RS01305	0.13	-0.7
298,173	-		BPHYT_RS01305	0.13	+1.3
298,382	+		BPHYT_RS01305	0.28	-1.8
298,382	+		BPHYT_RS01305	0.28	+1.3
298,382	+		BPHYT_RS01305	0.28	+1.5
298,382	+		BPHYT_RS01305	0.28	-0.2
298,538	-		BPHYT_RS01305	0.39	-0.9
298,875	+		BPHYT_RS01305	0.63	+0.9