Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00550 and BPHYT_RS00555 are separated by 772 nucleotides BPHYT_RS00555 and BPHYT_RS00560 are separated by 152 nucleotides
BPHYT_RS00550: BPHYT_RS00550 - excinuclease ABC subunit B, at 132,757 to 134,736
_RS00550
BPHYT_RS00555: BPHYT_RS00555 - hypothetical protein, at 135,509 to 135,910
_RS00555
BPHYT_RS00560: BPHYT_RS00560 - membrane protein, at 136,063 to 137,451
_RS00560
Position (kb) 135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 134.819 kb on + strand at 134.996 kb on + strand at 134.997 kb on - strand at 134.997 kb on - strand at 135.114 kb on - strand at 135.120 kb on + strand at 135.121 kb on - strand at 135.121 kb on - strand at 135.121 kb on - strand at 135.121 kb on - strand at 135.124 kb on + strand at 135.124 kb on + strand at 135.124 kb on + strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.459 kb on - strand at 135.463 kb on - strand at 135.526 kb on - strand at 135.558 kb on + strand, within BPHYT_RS00555 at 135.558 kb on + strand, within BPHYT_RS00555 at 135.559 kb on - strand, within BPHYT_RS00555 at 135.665 kb on - strand, within BPHYT_RS00555 at 135.681 kb on + strand, within BPHYT_RS00555 at 135.693 kb on - strand, within BPHYT_RS00555 at 135.693 kb on - strand, within BPHYT_RS00555 at 135.693 kb on - strand, within BPHYT_RS00555 at 135.908 kb on + strand at 135.911 kb on + strand at 135.912 kb on - strand at 136.126 kb on - strand at 136.212 kb on + strand, within BPHYT_RS00560 at 136.212 kb on + strand, within BPHYT_RS00560 at 136.212 kb on + strand, within BPHYT_RS00560 at 136.218 kb on + strand, within BPHYT_RS00560 at 136.218 kb on + strand, within BPHYT_RS00560 at 136.219 kb on - strand, within BPHYT_RS00560 at 136.219 kb on - strand, within BPHYT_RS00560 at 136.222 kb on + strand, within BPHYT_RS00560 at 136.222 kb on + strand, within BPHYT_RS00560 at 136.360 kb on + strand, within BPHYT_RS00560 at 136.544 kb on + strand, within BPHYT_RS00560 at 136.544 kb on + strand, within BPHYT_RS00560 at 136.545 kb on - strand, within BPHYT_RS00560 at 136.620 kb on + strand, within BPHYT_RS00560 at 136.805 kb on - strand, within BPHYT_RS00560
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 134,819 + -1.2 134,996 + -0.7 134,997 - -0.1 134,997 - +1.5 135,114 - -0.5 135,120 + -0.5 135,121 - -0.7 135,121 - -1.3 135,121 - -0.2 135,121 - -0.1 135,124 + +0.0 135,124 + -1.2 135,124 + -1.7 135,125 - +1.3 135,125 - -0.9 135,125 - +0.5 135,125 - -0.2 135,459 - -0.4 135,463 - +0.9 135,526 - -1.1 135,558 + BPHYT_RS00555 0.12 -2.3 135,558 + BPHYT_RS00555 0.12 -0.2 135,559 - BPHYT_RS00555 0.12 -2.4 135,665 - BPHYT_RS00555 0.39 -0.9 135,681 + BPHYT_RS00555 0.43 -0.3 135,693 - BPHYT_RS00555 0.46 +0.8 135,693 - BPHYT_RS00555 0.46 -1.1 135,693 - BPHYT_RS00555 0.46 -3.0 135,908 + -0.4 135,911 + +0.4 135,912 - -1.6 136,126 - -0.7 136,212 + BPHYT_RS00560 0.11 +1.1 136,212 + BPHYT_RS00560 0.11 +0.5 136,212 + BPHYT_RS00560 0.11 -1.0 136,218 + BPHYT_RS00560 0.11 -0.1 136,218 + BPHYT_RS00560 0.11 -0.9 136,219 - BPHYT_RS00560 0.11 -0.3 136,219 - BPHYT_RS00560 0.11 +0.7 136,222 + BPHYT_RS00560 0.11 -0.6 136,222 + BPHYT_RS00560 0.11 -0.9 136,360 + BPHYT_RS00560 0.21 -2.9 136,544 + BPHYT_RS00560 0.35 -0.3 136,544 + BPHYT_RS00560 0.35 -0.8 136,545 - BPHYT_RS00560 0.35 -0.3 136,620 + BPHYT_RS00560 0.40 -0.1 136,805 - BPHYT_RS00560 0.53 +0.1
Or see this region's nucleotide sequence