Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36315 and BPHYT_RS36320 are separated by 2 nucleotides BPHYT_RS36320 and BPHYT_RS36325 are separated by 77 nucleotides BPHYT_RS36325 and BPHYT_RS36330 are separated by 201 nucleotides
BPHYT_RS36315: BPHYT_RS36315 - CagE TrbE VirB component of type IV transporter system, at 74,136 to 76,685
_RS36315
BPHYT_RS36320: BPHYT_RS36320 - type IV secretion system family protein, at 76,688 to 77,392
_RS36320
BPHYT_RS36325: BPHYT_RS36325 - TrbL/VirB6 plasmid conjugal transfer protein, at 77,470 to 78,468
_RS36325
BPHYT_RS36330: BPHYT_RS36330 - type IV secretory protein VirB8, at 78,670 to 79,569
_RS36330
Position (kb) 77
78
79 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 76.535 kb on - strand at 77.127 kb on - strand, within BPHYT_RS36320 at 77.127 kb on - strand, within BPHYT_RS36320 at 77.145 kb on - strand, within BPHYT_RS36320 at 77.713 kb on + strand, within BPHYT_RS36325 at 77.775 kb on + strand, within BPHYT_RS36325 at 77.805 kb on + strand, within BPHYT_RS36325 at 77.806 kb on - strand, within BPHYT_RS36325 at 78.022 kb on - strand, within BPHYT_RS36325 at 78.083 kb on - strand, within BPHYT_RS36325 at 78.085 kb on + strand, within BPHYT_RS36325 at 78.086 kb on - strand, within BPHYT_RS36325 at 78.137 kb on + strand, within BPHYT_RS36325 at 78.148 kb on + strand, within BPHYT_RS36325 at 78.148 kb on + strand, within BPHYT_RS36325 at 78.283 kb on + strand, within BPHYT_RS36325 at 78.283 kb on + strand, within BPHYT_RS36325 at 78.416 kb on - strand at 78.416 kb on - strand at 78.484 kb on - strand at 78.509 kb on - strand at 78.761 kb on + strand, within BPHYT_RS36330 at 78.762 kb on - strand, within BPHYT_RS36330 at 78.886 kb on + strand, within BPHYT_RS36330 at 78.887 kb on - strand, within BPHYT_RS36330 at 78.889 kb on + strand, within BPHYT_RS36330 at 78.889 kb on + strand, within BPHYT_RS36330 at 78.889 kb on + strand, within BPHYT_RS36330 at 78.890 kb on - strand, within BPHYT_RS36330 at 78.964 kb on + strand, within BPHYT_RS36330 at 79.012 kb on + strand, within BPHYT_RS36330 at 79.023 kb on - strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.067 kb on - strand, within BPHYT_RS36330 at 79.145 kb on - strand, within BPHYT_RS36330 at 79.207 kb on + strand, within BPHYT_RS36330 at 79.208 kb on - strand, within BPHYT_RS36330 at 79.442 kb on + strand, within BPHYT_RS36330 at 79.459 kb on + strand, within BPHYT_RS36330 at 79.459 kb on + strand, within BPHYT_RS36330
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 76,535 - -0.2 77,127 - BPHYT_RS36320 0.62 -0.8 77,127 - BPHYT_RS36320 0.62 +0.8 77,145 - BPHYT_RS36320 0.65 -1.4 77,713 + BPHYT_RS36325 0.24 -2.8 77,775 + BPHYT_RS36325 0.31 +0.3 77,805 + BPHYT_RS36325 0.34 -1.1 77,806 - BPHYT_RS36325 0.34 -0.8 78,022 - BPHYT_RS36325 0.55 -1.5 78,083 - BPHYT_RS36325 0.61 -1.1 78,085 + BPHYT_RS36325 0.62 -0.4 78,086 - BPHYT_RS36325 0.62 +2.2 78,137 + BPHYT_RS36325 0.67 -3.3 78,148 + BPHYT_RS36325 0.68 -1.9 78,148 + BPHYT_RS36325 0.68 -0.9 78,283 + BPHYT_RS36325 0.81 +1.9 78,283 + BPHYT_RS36325 0.81 +0.3 78,416 - +0.9 78,416 - -1.2 78,484 - +0.3 78,509 - -1.9 78,761 + BPHYT_RS36330 0.10 -2.9 78,762 - BPHYT_RS36330 0.10 -0.1 78,886 + BPHYT_RS36330 0.24 +0.7 78,887 - BPHYT_RS36330 0.24 +0.1 78,889 + BPHYT_RS36330 0.24 -0.2 78,889 + BPHYT_RS36330 0.24 -0.7 78,889 + BPHYT_RS36330 0.24 -0.1 78,890 - BPHYT_RS36330 0.24 -1.2 78,964 + BPHYT_RS36330 0.33 +0.9 79,012 + BPHYT_RS36330 0.38 +0.4 79,023 - BPHYT_RS36330 0.39 -0.4 79,066 + BPHYT_RS36330 0.44 +1.4 79,066 + BPHYT_RS36330 0.44 +0.1 79,066 + BPHYT_RS36330 0.44 -1.7 79,066 + BPHYT_RS36330 0.44 -4.9 79,067 - BPHYT_RS36330 0.44 -1.5 79,145 - BPHYT_RS36330 0.53 +0.2 79,207 + BPHYT_RS36330 0.60 -0.5 79,208 - BPHYT_RS36330 0.60 -0.7 79,442 + BPHYT_RS36330 0.86 +0.3 79,459 + BPHYT_RS36330 0.88 -0.1 79,459 + BPHYT_RS36330 0.88 -2.1
Or see this region's nucleotide sequence