Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36000 and BPHYT_RS36005 are separated by 151 nucleotides BPHYT_RS36005 and BPHYT_RS36010 are separated by 63 nucleotides BPHYT_RS36010 and BPHYT_RS36015 are separated by 58 nucleotides BPHYT_RS36015 and BPHYT_RS36020 are separated by 181 nucleotides BPHYT_RS36020 and BPHYT_RS36025 are separated by 150 nucleotides
BPHYT_RS36000: BPHYT_RS36000 - hypothetical protein, at 32,661 to 32,903
_RS36000
BPHYT_RS36005: BPHYT_RS36005 - hypothetical protein, at 33,055 to 33,375
_RS36005
BPHYT_RS36010: BPHYT_RS36010 - hypothetical protein, at 33,439 to 33,915
_RS36010
BPHYT_RS36015: BPHYT_RS36015 - hypothetical protein, at 33,974 to 34,153
_RS36015
BPHYT_RS36020: BPHYT_RS36020 - hypothetical protein, at 34,335 to 34,571
_RS36020
BPHYT_RS36025: BPHYT_RS36025 - hypothetical protein, at 34,722 to 35,090
_RS36025
Position (kb) 33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 32.487 kb on + strand at 32.488 kb on - strand at 32.501 kb on - strand at 32.814 kb on - strand, within BPHYT_RS36000 at 32.829 kb on - strand, within BPHYT_RS36000 at 32.829 kb on - strand, within BPHYT_RS36000 at 32.933 kb on - strand at 32.949 kb on + strand at 33.030 kb on + strand at 33.033 kb on + strand at 33.033 kb on + strand at 33.109 kb on + strand, within BPHYT_RS36005 at 33.110 kb on - strand, within BPHYT_RS36005 at 33.110 kb on - strand, within BPHYT_RS36005 at 33.239 kb on - strand at 33.239 kb on - strand, within BPHYT_RS36005 at 33.329 kb on - strand, within BPHYT_RS36005 at 33.358 kb on + strand at 33.359 kb on - strand at 33.359 kb on - strand at 33.560 kb on + strand, within BPHYT_RS36010 at 33.774 kb on + strand, within BPHYT_RS36010 at 33.775 kb on - strand, within BPHYT_RS36010 at 33.787 kb on + strand, within BPHYT_RS36010 at 33.787 kb on + strand, within BPHYT_RS36010 at 33.787 kb on + strand, within BPHYT_RS36010 at 33.788 kb on - strand, within BPHYT_RS36010 at 33.847 kb on + strand, within BPHYT_RS36010 at 33.902 kb on + strand at 33.924 kb on - strand at 33.924 kb on - strand at 34.153 kb on + strand at 34.154 kb on - strand at 34.273 kb on - strand at 34.731 kb on - strand at 34.880 kb on + strand, within BPHYT_RS36025 at 34.881 kb on - strand, within BPHYT_RS36025 at 34.881 kb on - strand, within BPHYT_RS36025
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 32,487 + -0.1 32,488 - +0.9 32,501 - -0.3 32,814 - BPHYT_RS36000 0.63 -3.2 32,829 - BPHYT_RS36000 0.69 +0.4 32,829 - BPHYT_RS36000 0.69 -1.2 32,933 - -0.1 32,949 + +0.3 33,030 + +0.4 33,033 + -0.4 33,033 + +1.4 33,109 + BPHYT_RS36005 0.17 +0.7 33,110 - BPHYT_RS36005 0.17 -0.1 33,110 - BPHYT_RS36005 0.17 -0.4 33,239 - -1.1 33,239 - BPHYT_RS36005 0.57 -1.1 33,329 - BPHYT_RS36005 0.85 +0.5 33,358 + +1.2 33,359 - +0.1 33,359 - -1.1 33,560 + BPHYT_RS36010 0.25 -3.0 33,774 + BPHYT_RS36010 0.70 -2.0 33,775 - BPHYT_RS36010 0.70 -0.7 33,787 + BPHYT_RS36010 0.73 -2.5 33,787 + BPHYT_RS36010 0.73 -2.7 33,787 + BPHYT_RS36010 0.73 -2.5 33,788 - BPHYT_RS36010 0.73 -0.4 33,847 + BPHYT_RS36010 0.86 +0.0 33,902 + +1.4 33,924 - +0.9 33,924 - -0.3 34,153 + -0.5 34,154 - -1.2 34,273 - +1.7 34,731 - -1.7 34,880 + BPHYT_RS36025 0.43 -1.0 34,881 - BPHYT_RS36025 0.43 -0.9 34,881 - BPHYT_RS36025 0.43 -1.0
Or see this region's nucleotide sequence