Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35845

Experiment: P. phyto PHYTO2 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS35840 and BPHYT_RS35845 are separated by 2 nucleotidesBPHYT_RS35845 and BPHYT_RS35850 are separated by 8 nucleotidesBPHYT_RS35850 and BPHYT_RS35855 are separated by 6 nucleotides BPHYT_RS35840: BPHYT_RS35840 - hypothetical protein, at 605 to 2,401 _RS35840 BPHYT_RS35845: BPHYT_RS35845 - hypothetical protein, at 2,404 to 3,792 _RS35845 BPHYT_RS35850: BPHYT_RS35850 - hypothetical protein, at 3,801 to 4,601 _RS35850 BPHYT_RS35855: BPHYT_RS35855 - type II secretion system protein E, at 4,608 to 6,626 _RS35855 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1at 1.543 kb on + strand, within BPHYT_RS35840at 1.631 kb on + strand, within BPHYT_RS35840at 1.713 kb on + strand, within BPHYT_RS35840at 1.923 kb on + strand, within BPHYT_RS35840at 1.924 kb on - strand, within BPHYT_RS35840at 1.938 kb on - strand, within BPHYT_RS35840at 2.177 kb on + strand, within BPHYT_RS35840at 2.179 kb on - strand, within BPHYT_RS35840at 2.326 kb on + strandat 2.777 kb on - strand, within BPHYT_RS35845at 2.823 kb on - strand, within BPHYT_RS35845at 2.920 kb on - strand, within BPHYT_RS35845at 2.950 kb on + strand, within BPHYT_RS35845at 2.951 kb on - strand, within BPHYT_RS35845at 2.951 kb on - strand, within BPHYT_RS35845at 3.055 kb on + strand, within BPHYT_RS35845at 3.056 kb on - strand, within BPHYT_RS35845at 3.090 kb on + strand, within BPHYT_RS35845at 3.110 kb on - strand, within BPHYT_RS35845at 3.121 kb on + strand, within BPHYT_RS35845at 3.122 kb on - strand, within BPHYT_RS35845at 3.210 kb on + strand, within BPHYT_RS35845at 3.210 kb on + strand, within BPHYT_RS35845at 3.211 kb on - strand, within BPHYT_RS35845at 3.260 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strandat 3.361 kb on + strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.404 kb on + strand, within BPHYT_RS35845at 3.526 kb on - strand, within BPHYT_RS35845at 3.799 kb on + strandat 3.995 kb on + strand, within BPHYT_RS35850at 4.077 kb on - strandat 4.308 kb on + strand, within BPHYT_RS35850at 4.308 kb on + strand, within BPHYT_RS35850at 4.318 kb on - strand, within BPHYT_RS35850at 4.519 kb on + strand, within BPHYT_RS35850at 4.519 kb on + strand, within BPHYT_RS35850at 4.520 kb on - strand, within BPHYT_RS35850at 4.599 kb on + strandat 4.599 kb on + strandat 4.599 kb on + strandat 4.690 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
remove
1,543 + BPHYT_RS35840 0.52 -1.0
1,631 + BPHYT_RS35840 0.57 +0.6
1,713 + BPHYT_RS35840 0.62 -0.0
1,923 + BPHYT_RS35840 0.73 -0.7
1,924 - BPHYT_RS35840 0.73 +0.9
1,938 - BPHYT_RS35840 0.74 -0.1
2,177 + BPHYT_RS35840 0.87 -0.3
2,179 - BPHYT_RS35840 0.88 -0.6
2,326 + -0.8
2,777 - BPHYT_RS35845 0.27 -2.9
2,823 - BPHYT_RS35845 0.30 -0.7
2,920 - BPHYT_RS35845 0.37 -1.1
2,950 + BPHYT_RS35845 0.39 -3.2
2,951 - BPHYT_RS35845 0.39 -0.6
2,951 - BPHYT_RS35845 0.39 -3.2
3,055 + BPHYT_RS35845 0.47 -1.1
3,056 - BPHYT_RS35845 0.47 -0.7
3,090 + BPHYT_RS35845 0.49 -0.7
3,110 - BPHYT_RS35845 0.51 +0.5
3,121 + BPHYT_RS35845 0.52 -1.5
3,122 - BPHYT_RS35845 0.52 +1.3
3,210 + BPHYT_RS35845 0.58 -2.6
3,210 + BPHYT_RS35845 0.58 -1.5
3,211 - BPHYT_RS35845 0.58 -1.6
3,260 - BPHYT_RS35845 0.62 -0.1
3,358 - BPHYT_RS35845 0.69 -3.2
3,358 - BPHYT_RS35845 0.69 -0.0
3,358 - BPHYT_RS35845 0.69 -0.0
3,358 - -1.1
3,361 + BPHYT_RS35845 0.69 -1.4
3,362 - BPHYT_RS35845 0.69 -1.5
3,362 - BPHYT_RS35845 0.69 +0.4
3,362 - BPHYT_RS35845 0.69 -1.6
3,362 - BPHYT_RS35845 0.69 +1.0
3,362 - BPHYT_RS35845 0.69 +1.3
3,362 - BPHYT_RS35845 0.69 -0.0
3,362 - BPHYT_RS35845 0.69 -0.8
3,404 + BPHYT_RS35845 0.72 -0.1
3,526 - BPHYT_RS35845 0.81 +0.9
3,799 + -2.3
3,995 + BPHYT_RS35850 0.24 -1.5
4,077 - -1.1
4,308 + BPHYT_RS35850 0.63 -2.1
4,308 + BPHYT_RS35850 0.63 -0.3
4,318 - BPHYT_RS35850 0.65 -1.2
4,519 + BPHYT_RS35850 0.90 -1.8
4,519 + BPHYT_RS35850 0.90 -0.5
4,520 - BPHYT_RS35850 0.90 +0.8
4,599 + +0.3
4,599 + -0.5
4,599 + +0.8
4,690 + +0.4

Or see this region's nucleotide sequence