Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33220

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
3,029,856	+				+1.9
3,029,891	-				+0.5
3,029,911	-				-0.4
3,030,045	+		BPHYT_RS33215	0.18	+0.1
3,030,217	+		BPHYT_RS33215	0.42	+2.1
3,030,221	+		BPHYT_RS33215	0.42	+2.8
3,030,225	+		BPHYT_RS33215	0.43	+1.7
3,030,383	-		BPHYT_RS33215	0.65	+0.7
3,030,455	-		BPHYT_RS33215	0.75	+0.9
3,030,502	+		BPHYT_RS33215	0.81	+3.1
3,030,673	+				+3.6
3,030,673	+				+2.2
3,030,673	+				+1.3
3,030,730	+				+2.2
3,030,730	+				+1.7
3,030,829	-				+1.3
3,030,890	-		BPHYT_RS33220	0.12	+0.7
3,030,895	+		BPHYT_RS33220	0.12	-1.9
3,030,896	-		BPHYT_RS33220	0.13	-0.0
3,030,941	-		BPHYT_RS33220	0.15	+1.7
3,030,941	-		BPHYT_RS33220	0.15	-1.7
3,031,398	-		BPHYT_RS33220	0.38	+0.4
3,031,403	+		BPHYT_RS33220	0.38	+0.8
3,031,404	-		BPHYT_RS33220	0.38	+2.5
3,031,404	-		BPHYT_RS33220	0.38	+1.5
3,031,626	+		BPHYT_RS33220	0.49	-1.5
3,031,663	+		BPHYT_RS33220	0.51	+1.4
3,031,817	+		BPHYT_RS33220	0.59	-1.8
3,031,842	+		BPHYT_RS33220	0.60	+2.4
3,031,842	+		BPHYT_RS33220	0.60	+2.2
3,032,117	+		BPHYT_RS33220	0.74	+2.7
3,032,129	+		BPHYT_RS33220	0.74	-0.7
3,032,130	-		BPHYT_RS33220	0.74	+1.2
3,032,133	-		BPHYT_RS33220	0.74	+0.4
3,032,133	-		BPHYT_RS33220	0.74	+1.7
3,032,269	-		BPHYT_RS33220	0.81	+0.7
3,032,628	+				-0.5
3,032,664	+				+6.1
3,032,720	-				-2.4
3,033,075	+				-0.7
3,033,151	-				-0.3
3,033,151	-				+1.5
3,033,332	+		BPHYT_RS33225	0.23	-1.1
3,033,575	-		BPHYT_RS33225	0.49	+0.8
3,033,606	+		BPHYT_RS33225	0.52	+0.2
3,033,614	+		BPHYT_RS33225	0.53	-0.3
3,033,619	-		BPHYT_RS33225	0.53	-1.7