Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32325

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32320 and BPHYT_RS32325 are separated by 993 nucleotidesBPHYT_RS32325 and BPHYT_RS32330 are separated by 73 nucleotides BPHYT_RS32320: BPHYT_RS32320 - nopaline dehydrogenase, at 2,820,879 to 2,822,294 _RS32320 BPHYT_RS32325: BPHYT_RS32325 - 5-oxoprolinase, at 2,823,288 to 2,825,012 _RS32325 BPHYT_RS32330: BPHYT_RS32330 - 5-oxoprolinase, at 2,825,086 to 2,827,122 _RS32330 Position (kb) 2823 2824 2825 2826Strain fitness (log2 ratio) -1 0 1at 2822.832 kb on - strandat 2823.341 kb on - strandat 2824.335 kb on - strand, within BPHYT_RS32325at 2824.686 kb on - strand, within BPHYT_RS32325at 2825.295 kb on + strand, within BPHYT_RS32330at 2825.853 kb on + strand, within BPHYT_RS32330at 2825.854 kb on - strand, within BPHYT_RS32330at 2825.883 kb on - strand, within BPHYT_RS32330at 2826.008 kb on + strand, within BPHYT_RS32330

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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2,822,832 - +0.4
2,823,341 - -0.9
2,824,335 - BPHYT_RS32325 0.61 -0.3
2,824,686 - BPHYT_RS32325 0.81 -0.4
2,825,295 + BPHYT_RS32330 0.10 +0.7
2,825,853 + BPHYT_RS32330 0.38 +0.3
2,825,854 - BPHYT_RS32330 0.38 -1.1
2,825,883 - BPHYT_RS32330 0.39 +0.6
2,826,008 + BPHYT_RS32330 0.45 +0.1

Or see this region's nucleotide sequence