Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30250

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
2,340,156	+		BPHYT_RS30245	0.31	+0.3
2,340,157	-		BPHYT_RS30245	0.31	-0.1
2,340,168	+		BPHYT_RS30245	0.32	-1.1
2,340,168	+		BPHYT_RS30245	0.32	+1.5
2,340,258	+		BPHYT_RS30245	0.40	+2.3
2,340,259	-		BPHYT_RS30245	0.40	+0.4
2,340,259	-		BPHYT_RS30245	0.40	-0.2
2,340,284	+		BPHYT_RS30245	0.42	+0.1
2,340,284	+		BPHYT_RS30245	0.42	-1.3
2,340,284	+		BPHYT_RS30245	0.42	-1.5
2,340,284	+		BPHYT_RS30245	0.42	+0.1
2,340,300	+		BPHYT_RS30245	0.43	-0.9
2,340,388	-		BPHYT_RS30245	0.50	-0.0
2,340,573	-		BPHYT_RS30245	0.65	+2.1
2,340,728	+		BPHYT_RS30245	0.78	+0.4
2,340,729	-		BPHYT_RS30245	0.78	-1.8
2,340,732	+		BPHYT_RS30245	0.78	+1.6
2,340,733	-		BPHYT_RS30245	0.78	-0.4
2,340,733	-		BPHYT_RS30245	0.78	-0.0
2,340,733	-		BPHYT_RS30245	0.78	+1.3
2,340,733	-		BPHYT_RS30245	0.78	-1.6
2,340,805	-		BPHYT_RS30245	0.84	-1.0
2,340,832	-		BPHYT_RS30245	0.87	-0.4
2,340,832	-		BPHYT_RS30245	0.87	-1.5
2,340,867	-		BPHYT_RS30245	0.89	-1.2
2,340,897	-				+0.2
2,341,684	-		BPHYT_RS30250	0.45	+2.3
2,341,684	-		BPHYT_RS30250	0.45	+0.7
2,341,833	+		BPHYT_RS30250	0.56	-0.6
2,341,833	+		BPHYT_RS30250	0.56	+0.7
2,341,834	-		BPHYT_RS30250	0.56	-0.6
2,342,548	+		BPHYT_RS30255	0.35	-1.8
2,342,549	-		BPHYT_RS30255	0.35	-1.4
2,342,551	+		BPHYT_RS30255	0.36	+0.1
2,342,977	+				-0.4
2,343,003	+				+0.3
2,343,199	+		BPHYT_RS30260	0.54	+0.8
2,343,202	+		BPHYT_RS30260	0.55	-0.8
2,343,203	-		BPHYT_RS30260	0.55	-1.9
2,343,203	-		BPHYT_RS30260	0.55	+0.9
2,343,253	+		BPHYT_RS30260	0.71	+0.2
2,343,395	-				+0.1