Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25850

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25845 and BPHYT_RS25850 are separated by 27 nucleotidesBPHYT_RS25850 and BPHYT_RS25855 are separated by 132 nucleotides BPHYT_RS25845: BPHYT_RS25845 - RND transporter MFP subunit, at 1,374,937 to 1,376,304 _RS25845 BPHYT_RS25850: BPHYT_RS25850 - RND transporter, at 1,376,332 to 1,377,819 _RS25850 BPHYT_RS25855: BPHYT_RS25855 - hypothetical protein, at 1,377,952 to 1,381,713 _RS25855 Position (kb) 1376 1377 1378Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1375.382 kb on - strand, within BPHYT_RS25845at 1377.813 kb on + strandat 1377.986 kb on - strandat 1378.018 kb on + strandat 1378.070 kb on - strandat 1378.188 kb on - strandat 1378.188 kb on - strandat 1378.259 kb on - strandat 1378.335 kb on + strand, within BPHYT_RS25855at 1378.561 kb on - strand, within BPHYT_RS25855at 1378.721 kb on + strand, within BPHYT_RS25855at 1378.722 kb on - strand, within BPHYT_RS25855at 1378.738 kb on + strand, within BPHYT_RS25855

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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1,375,382 - BPHYT_RS25845 0.33 -3.4
1,377,813 + -0.1
1,377,986 - -0.1
1,378,018 + -0.1
1,378,070 - +0.6
1,378,188 - -0.1
1,378,188 - -0.2
1,378,259 - +1.3
1,378,335 + BPHYT_RS25855 0.10 -0.3
1,378,561 - BPHYT_RS25855 0.16 +0.6
1,378,721 + BPHYT_RS25855 0.20 -1.0
1,378,722 - BPHYT_RS25855 0.20 +2.0
1,378,738 + BPHYT_RS25855 0.21 -2.0

Or see this region's nucleotide sequence