Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24150 and BPHYT_RS24155 are separated by 208 nucleotides BPHYT_RS24155 and BPHYT_RS24160 are separated by 224 nucleotides
BPHYT_RS24150: BPHYT_RS24150 - glucarate transporter, at 985,625 to 986,977
_RS24150
BPHYT_RS24155: BPHYT_RS24155 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) <small>(from data)</small>, at 987,186 to 988,103
_RS24155
BPHYT_RS24160: BPHYT_RS24160 - D-galactarate dehydratase, at 988,328 to 989,917
_RS24160
Position (kb) 987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 986.425 kb on - strand, within BPHYT_RS24150 at 986.773 kb on - strand, within BPHYT_RS24150 at 986.800 kb on - strand, within BPHYT_RS24150 at 986.877 kb on + strand at 986.997 kb on + strand at 986.997 kb on + strand at 987.056 kb on + strand at 987.419 kb on - strand, within BPHYT_RS24155 at 987.491 kb on - strand, within BPHYT_RS24155 at 987.491 kb on - strand, within BPHYT_RS24155 at 987.491 kb on - strand, within BPHYT_RS24155 at 987.654 kb on - strand, within BPHYT_RS24155 at 987.654 kb on - strand, within BPHYT_RS24155 at 987.760 kb on + strand, within BPHYT_RS24155 at 987.761 kb on - strand, within BPHYT_RS24155 at 987.908 kb on - strand, within BPHYT_RS24155 at 987.974 kb on - strand at 988.003 kb on + strand, within BPHYT_RS24155 at 988.003 kb on + strand, within BPHYT_RS24155 at 988.004 kb on - strand, within BPHYT_RS24155 at 988.004 kb on - strand, within BPHYT_RS24155 at 988.004 kb on - strand, within BPHYT_RS24155 at 988.007 kb on + strand, within BPHYT_RS24155 at 988.106 kb on + strand at 988.106 kb on + strand at 988.107 kb on - strand at 988.107 kb on - strand at 988.107 kb on - strand at 988.107 kb on - strand at 988.111 kb on - strand at 988.219 kb on + strand at 988.219 kb on + strand at 988.416 kb on + strand at 988.509 kb on - strand, within BPHYT_RS24160 at 988.510 kb on + strand, within BPHYT_RS24160 at 988.657 kb on + strand, within BPHYT_RS24160 at 988.657 kb on + strand, within BPHYT_RS24160 at 988.658 kb on - strand, within BPHYT_RS24160 at 988.769 kb on - strand, within BPHYT_RS24160
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 986,425 - BPHYT_RS24150 0.59 -2.8 986,773 - BPHYT_RS24150 0.85 -0.6 986,800 - BPHYT_RS24150 0.87 -1.0 986,877 + +0.4 986,997 + -0.1 986,997 + +0.6 987,056 + +0.9 987,419 - BPHYT_RS24155 0.25 +0.1 987,491 - BPHYT_RS24155 0.33 +0.5 987,491 - BPHYT_RS24155 0.33 -3.1 987,491 - BPHYT_RS24155 0.33 -0.6 987,654 - BPHYT_RS24155 0.51 +0.1 987,654 - BPHYT_RS24155 0.51 -0.3 987,760 + BPHYT_RS24155 0.63 +1.2 987,761 - BPHYT_RS24155 0.63 -1.6 987,908 - BPHYT_RS24155 0.79 -0.6 987,974 - -0.0 988,003 + BPHYT_RS24155 0.89 +0.4 988,003 + BPHYT_RS24155 0.89 -0.8 988,004 - BPHYT_RS24155 0.89 +0.7 988,004 - BPHYT_RS24155 0.89 -0.0 988,004 - BPHYT_RS24155 0.89 -0.9 988,007 + BPHYT_RS24155 0.89 -2.2 988,106 + +1.6 988,106 + +1.2 988,107 - -3.5 988,107 - +1.0 988,107 - -0.2 988,107 - +0.5 988,111 - -1.2 988,219 + -0.2 988,219 + +0.3 988,416 + -1.1 988,509 - BPHYT_RS24160 0.11 -1.7 988,510 + BPHYT_RS24160 0.11 +1.0 988,657 + BPHYT_RS24160 0.21 +0.2 988,657 + BPHYT_RS24160 0.21 +0.4 988,658 - BPHYT_RS24160 0.21 -0.0 988,769 - BPHYT_RS24160 0.28 +0.0
Or see this region's nucleotide sequence