Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23935 and BPHYT_RS23940 are separated by 8 nucleotides BPHYT_RS23940 and BPHYT_RS23945 are separated by 174 nucleotides
BPHYT_RS23935: BPHYT_RS23935 - malonate decarboxylase subunit alpha, at 934,323 to 936,005
_RS23935
BPHYT_RS23940: BPHYT_RS23940 - GntR family transcriptional regulator, at 936,014 to 936,787
_RS23940
BPHYT_RS23945: BPHYT_RS23945 - MFS transporter, at 936,962 to 938,263
_RS23945
Position (kb) 936
937 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 935.162 kb on - strand, within BPHYT_RS23935 at 935.223 kb on + strand, within BPHYT_RS23935 at 935.224 kb on - strand, within BPHYT_RS23935 at 935.486 kb on - strand, within BPHYT_RS23935 at 935.564 kb on - strand, within BPHYT_RS23935 at 935.575 kb on + strand, within BPHYT_RS23935 at 935.575 kb on + strand, within BPHYT_RS23935 at 935.575 kb on + strand, within BPHYT_RS23935 at 935.576 kb on - strand, within BPHYT_RS23935 at 935.579 kb on + strand, within BPHYT_RS23935 at 935.580 kb on - strand, within BPHYT_RS23935 at 935.581 kb on + strand, within BPHYT_RS23935 at 935.666 kb on + strand, within BPHYT_RS23935 at 936.012 kb on - strand at 936.099 kb on - strand, within BPHYT_RS23940 at 936.109 kb on - strand, within BPHYT_RS23940 at 936.916 kb on - strand at 937.182 kb on + strand, within BPHYT_RS23945 at 937.260 kb on + strand, within BPHYT_RS23945 at 937.260 kb on + strand, within BPHYT_RS23945 at 937.341 kb on - strand, within BPHYT_RS23945 at 937.394 kb on + strand, within BPHYT_RS23945 at 937.395 kb on - strand, within BPHYT_RS23945 at 937.460 kb on + strand, within BPHYT_RS23945 at 937.461 kb on - strand, within BPHYT_RS23945 at 937.493 kb on + strand, within BPHYT_RS23945
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 935,162 - BPHYT_RS23935 0.50 +0.6 935,223 + BPHYT_RS23935 0.53 -2.5 935,224 - BPHYT_RS23935 0.54 -1.9 935,486 - BPHYT_RS23935 0.69 -2.4 935,564 - BPHYT_RS23935 0.74 -1.5 935,575 + BPHYT_RS23935 0.74 -1.0 935,575 + BPHYT_RS23935 0.74 +1.2 935,575 + BPHYT_RS23935 0.74 +0.6 935,576 - BPHYT_RS23935 0.74 +2.2 935,579 + BPHYT_RS23935 0.75 -2.3 935,580 - BPHYT_RS23935 0.75 -1.5 935,581 + BPHYT_RS23935 0.75 +0.4 935,666 + BPHYT_RS23935 0.80 +1.7 936,012 - +0.4 936,099 - BPHYT_RS23940 0.11 -1.1 936,109 - BPHYT_RS23940 0.12 -1.3 936,916 - -3.8 937,182 + BPHYT_RS23945 0.17 +0.9 937,260 + BPHYT_RS23945 0.23 +0.2 937,260 + BPHYT_RS23945 0.23 +0.1 937,341 - BPHYT_RS23945 0.29 +0.3 937,394 + BPHYT_RS23945 0.33 -0.7 937,395 - BPHYT_RS23945 0.33 -0.1 937,460 + BPHYT_RS23945 0.38 +0.3 937,461 - BPHYT_RS23945 0.38 -1.0 937,493 + BPHYT_RS23945 0.41 -0.5
Or see this region's nucleotide sequence