Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23650 and BPHYT_RS23655 are separated by 90 nucleotides BPHYT_RS23655 and BPHYT_RS23660 are separated by 60 nucleotides
BPHYT_RS23650: BPHYT_RS23650 - hypothetical protein, at 876,391 to 876,729
_RS23650
BPHYT_RS23655: BPHYT_RS23655 - peroxiredoxin, at 876,820 to 877,296
_RS23655
BPHYT_RS23660: BPHYT_RS23660 - manganese transporter, at 877,357 to 879,015
_RS23660
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 876.412 kb on - strand at 876.519 kb on + strand, within BPHYT_RS23650 at 876.727 kb on + strand at 876.728 kb on - strand at 876.827 kb on - strand at 876.837 kb on + strand at 876.838 kb on - strand at 876.841 kb on + strand at 876.841 kb on + strand at 876.842 kb on - strand at 876.842 kb on - strand at 876.842 kb on - strand at 877.232 kb on - strand, within BPHYT_RS23655 at 877.696 kb on + strand, within BPHYT_RS23660 at 877.696 kb on + strand, within BPHYT_RS23660 at 877.697 kb on - strand, within BPHYT_RS23660 at 877.916 kb on + strand, within BPHYT_RS23660 at 877.925 kb on + strand, within BPHYT_RS23660 at 878.232 kb on - strand, within BPHYT_RS23660 at 878.270 kb on + strand, within BPHYT_RS23660 at 878.271 kb on - strand, within BPHYT_RS23660 at 878.578 kb on + strand, within BPHYT_RS23660 at 878.580 kb on + strand, within BPHYT_RS23660 at 878.581 kb on - strand, within BPHYT_RS23660 at 878.581 kb on - strand, within BPHYT_RS23660 at 878.784 kb on - strand, within BPHYT_RS23660 at 878.804 kb on + strand, within BPHYT_RS23660 at 878.804 kb on + strand, within BPHYT_RS23660 at 879.137 kb on + strand at 879.287 kb on + strand at 879.287 kb on + strand at 879.288 kb on - strand at 879.288 kb on - strand at 879.382 kb on + strand at 879.472 kb on - strand at 879.472 kb on - strand at 879.682 kb on - strand at 879.880 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 876,412 - +0.1 876,519 + BPHYT_RS23650 0.38 -2.5 876,727 + +1.4 876,728 - -0.1 876,827 - -0.0 876,837 + -0.5 876,838 - -1.4 876,841 + +0.6 876,841 + +0.4 876,842 - -1.2 876,842 - +0.3 876,842 - +0.8 877,232 - BPHYT_RS23655 0.86 +1.3 877,696 + BPHYT_RS23660 0.20 +2.3 877,696 + BPHYT_RS23660 0.20 +0.1 877,697 - BPHYT_RS23660 0.20 -0.1 877,916 + BPHYT_RS23660 0.34 -1.9 877,925 + BPHYT_RS23660 0.34 +0.8 878,232 - BPHYT_RS23660 0.53 +1.2 878,270 + BPHYT_RS23660 0.55 +0.3 878,271 - BPHYT_RS23660 0.55 +0.6 878,578 + BPHYT_RS23660 0.74 +0.3 878,580 + BPHYT_RS23660 0.74 -0.2 878,581 - BPHYT_RS23660 0.74 -0.3 878,581 - BPHYT_RS23660 0.74 -0.2 878,784 - BPHYT_RS23660 0.86 +0.6 878,804 + BPHYT_RS23660 0.87 -0.4 878,804 + BPHYT_RS23660 0.87 +0.5 879,137 + +1.5 879,287 + -2.3 879,287 + +0.9 879,288 - +1.4 879,288 - +0.3 879,382 + -0.8 879,472 - +0.2 879,472 - -2.6 879,682 - +1.3 879,880 - -0.2
Or see this region's nucleotide sequence