Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23340

Experiment: P. phyto PHYTO2 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23335 and BPHYT_RS23340 are separated by 716 nucleotidesBPHYT_RS23340 and BPHYT_RS23345 are separated by 92 nucleotides BPHYT_RS23335: BPHYT_RS23335 - aspartate racemase, at 794,689 to 795,390 _RS23335 BPHYT_RS23340: BPHYT_RS23340 - sugar transporter, at 796,107 to 798,350 _RS23340 BPHYT_RS23345: BPHYT_RS23345 - nucleotide sugar dehydrogenase, at 798,443 to 799,720 _RS23345 Position (kb) 796 797 798 799Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 795.513 kb on + strandat 795.570 kb on - strandat 795.973 kb on + strandat 796.003 kb on + strandat 796.004 kb on - strandat 796.082 kb on + strandat 796.119 kb on + strandat 796.119 kb on + strandat 796.437 kb on + strand, within BPHYT_RS23340at 796.449 kb on + strand, within BPHYT_RS23340at 796.617 kb on + strand, within BPHYT_RS23340at 796.647 kb on + strand, within BPHYT_RS23340at 796.936 kb on - strand, within BPHYT_RS23340at 796.989 kb on + strand, within BPHYT_RS23340at 797.046 kb on + strand, within BPHYT_RS23340at 797.055 kb on + strand, within BPHYT_RS23340at 797.520 kb on + strand, within BPHYT_RS23340at 797.521 kb on - strand, within BPHYT_RS23340at 797.886 kb on + strand, within BPHYT_RS23340at 798.426 kb on - strandat 798.757 kb on + strand, within BPHYT_RS23345at 799.329 kb on - strand, within BPHYT_RS23345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
remove
795,513 + +1.0
795,570 - +1.6
795,973 + +1.8
796,003 + -0.6
796,004 - +0.3
796,082 + -0.4
796,119 + +0.2
796,119 + -0.2
796,437 + BPHYT_RS23340 0.15 -1.3
796,449 + BPHYT_RS23340 0.15 -0.2
796,617 + BPHYT_RS23340 0.23 +0.3
796,647 + BPHYT_RS23340 0.24 -0.2
796,936 - BPHYT_RS23340 0.37 -0.5
796,989 + BPHYT_RS23340 0.39 +1.3
797,046 + BPHYT_RS23340 0.42 -0.4
797,055 + BPHYT_RS23340 0.42 +0.2
797,520 + BPHYT_RS23340 0.63 +0.6
797,521 - BPHYT_RS23340 0.63 -4.2
797,886 + BPHYT_RS23340 0.79 -2.6
798,426 - -1.1
798,757 + BPHYT_RS23345 0.25 -0.6
799,329 - BPHYT_RS23345 0.69 +0.8

Or see this region's nucleotide sequence