Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23050

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23045 and BPHYT_RS23050 are separated by 131 nucleotidesBPHYT_RS23050 and BPHYT_RS23055 are separated by 272 nucleotides BPHYT_RS23045: BPHYT_RS23045 - AsnC family transcriptional regulator, at 732,189 to 732,854 _RS23045 BPHYT_RS23050: BPHYT_RS23050 - hypothetical protein, at 732,986 to 733,306 _RS23050 BPHYT_RS23055: BPHYT_RS23055 - LysR family transcriptional regulator, at 733,579 to 734,481 _RS23055 Position (kb) 732 733 734Strain fitness (log2 ratio) -2 -1 0 1 2at 732.073 kb on + strandat 732.074 kb on - strandat 732.136 kb on + strandat 733.046 kb on + strand, within BPHYT_RS23050at 733.433 kb on + strandat 733.434 kb on - strandat 733.549 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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732,073 + +0.6
732,074 - -2.1
732,136 + -2.1
733,046 + BPHYT_RS23050 0.19 +0.7
733,433 + -0.4
733,434 - -2.2
733,549 + +2.3

Or see this region's nucleotide sequence