Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22940

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22930 and BPHYT_RS22935 are separated by 26 nucleotidesBPHYT_RS22935 and BPHYT_RS22940 overlap by 4 nucleotidesBPHYT_RS22940 and BPHYT_RS22945 are separated by 1 nucleotidesBPHYT_RS22945 and BPHYT_RS22950 are separated by 53 nucleotides BPHYT_RS22930: BPHYT_RS22930 - type II secretion system protein, at 703,406 to 704,362 _RS22930 BPHYT_RS22935: BPHYT_RS22935 - fatty acid hydroxylase, at 704,389 to 705,255 _RS22935 BPHYT_RS22940: BPHYT_RS22940 - pilus assembly protein TadE, at 705,252 to 705,782 _RS22940 BPHYT_RS22945: BPHYT_RS22945 - pilus assembly protein TadE, at 705,784 to 706,413 _RS22945 BPHYT_RS22950: BPHYT_RS22950 - von Willebrand factor A, at 706,467 to 707,822 _RS22950 Position (kb) 705 706Strain fitness (log2 ratio) -2 -1 0 1at 704.374 kb on - strandat 704.563 kb on + strand, within BPHYT_RS22935at 704.563 kb on + strand, within BPHYT_RS22935at 704.742 kb on + strand, within BPHYT_RS22935at 704.743 kb on - strand, within BPHYT_RS22935at 704.743 kb on - strand, within BPHYT_RS22935at 704.743 kb on - strand, within BPHYT_RS22935at 704.857 kb on + strand, within BPHYT_RS22935at 704.936 kb on - strand, within BPHYT_RS22935at 705.514 kb on - strand, within BPHYT_RS22940at 705.630 kb on + strand, within BPHYT_RS22940at 705.630 kb on + strand, within BPHYT_RS22940at 705.887 kb on - strand, within BPHYT_RS22945at 706.051 kb on + strand, within BPHYT_RS22945at 706.052 kb on - strand, within BPHYT_RS22945at 706.322 kb on + strand, within BPHYT_RS22945at 706.393 kb on + strandat 706.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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704,374 - -0.6
704,563 + BPHYT_RS22935 0.20 +0.7
704,563 + BPHYT_RS22935 0.20 -0.4
704,742 + BPHYT_RS22935 0.41 -0.1
704,743 - BPHYT_RS22935 0.41 -0.5
704,743 - BPHYT_RS22935 0.41 -2.4
704,743 - BPHYT_RS22935 0.41 -0.6
704,857 + BPHYT_RS22935 0.54 -1.7
704,936 - BPHYT_RS22935 0.63 -1.1
705,514 - BPHYT_RS22940 0.49 -1.2
705,630 + BPHYT_RS22940 0.71 +0.4
705,630 + BPHYT_RS22940 0.71 -0.5
705,887 - BPHYT_RS22945 0.16 +0.0
706,051 + BPHYT_RS22945 0.42 -1.3
706,052 - BPHYT_RS22945 0.43 +0.7
706,322 + BPHYT_RS22945 0.85 +1.5
706,393 + +0.3
706,599 - -0.4

Or see this region's nucleotide sequence