Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22220 and BPHYT_RS22225 are separated by 158 nucleotides BPHYT_RS22225 and BPHYT_RS22230 are separated by 109 nucleotides BPHYT_RS22230 and BPHYT_RS22235 overlap by 4 nucleotides
BPHYT_RS22220: BPHYT_RS22220 - sulfatase, at 542,836 to 544,782
_RS22220
BPHYT_RS22225: BPHYT_RS22225 - hypothetical protein, at 544,941 to 545,489
_RS22225
BPHYT_RS22230: BPHYT_RS22230 - LuxR family transcriptional regulator, at 545,599 to 546,246
_RS22230
BPHYT_RS22235: BPHYT_RS22235 - sensor histidine kinase, at 546,243 to 547,658
_RS22235
Position (kb) 544
545
546 Strain fitness (log2 ratio) -2
-1
0
1 at 543.959 kb on + strand, within BPHYT_RS22220 at 543.960 kb on - strand, within BPHYT_RS22220 at 544.062 kb on - strand, within BPHYT_RS22220 at 544.083 kb on - strand, within BPHYT_RS22220 at 544.238 kb on + strand, within BPHYT_RS22220 at 544.238 kb on + strand, within BPHYT_RS22220 at 544.238 kb on + strand, within BPHYT_RS22220 at 544.239 kb on - strand, within BPHYT_RS22220 at 544.239 kb on - strand, within BPHYT_RS22220 at 544.239 kb on - strand, within BPHYT_RS22220 at 544.242 kb on + strand, within BPHYT_RS22220 at 544.243 kb on - strand, within BPHYT_RS22220 at 544.312 kb on - strand, within BPHYT_RS22220 at 544.330 kb on - strand, within BPHYT_RS22220 at 544.331 kb on + strand, within BPHYT_RS22220 at 544.332 kb on - strand, within BPHYT_RS22220 at 544.332 kb on - strand, within BPHYT_RS22220 at 544.657 kb on + strand at 544.800 kb on - strand at 544.800 kb on - strand at 544.861 kb on + strand at 544.879 kb on + strand at 544.880 kb on - strand at 545.116 kb on + strand, within BPHYT_RS22225 at 545.117 kb on - strand, within BPHYT_RS22225 at 545.233 kb on + strand, within BPHYT_RS22225 at 545.234 kb on - strand, within BPHYT_RS22225 at 545.435 kb on + strand at 545.924 kb on + strand, within BPHYT_RS22230 at 545.925 kb on - strand, within BPHYT_RS22230 at 546.456 kb on + strand, within BPHYT_RS22235 at 546.457 kb on - strand, within BPHYT_RS22235 at 546.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 543,959 + BPHYT_RS22220 0.58 -0.9 543,960 - BPHYT_RS22220 0.58 -0.6 544,062 - BPHYT_RS22220 0.63 +0.5 544,083 - BPHYT_RS22220 0.64 +0.6 544,238 + BPHYT_RS22220 0.72 -0.1 544,238 + BPHYT_RS22220 0.72 -2.1 544,238 + BPHYT_RS22220 0.72 -0.6 544,239 - BPHYT_RS22220 0.72 -1.2 544,239 - BPHYT_RS22220 0.72 +0.3 544,239 - BPHYT_RS22220 0.72 +0.1 544,242 + BPHYT_RS22220 0.72 +0.4 544,243 - BPHYT_RS22220 0.72 -0.4 544,312 - BPHYT_RS22220 0.76 +0.5 544,330 - BPHYT_RS22220 0.77 -0.6 544,331 + BPHYT_RS22220 0.77 -1.8 544,332 - BPHYT_RS22220 0.77 -0.0 544,332 - BPHYT_RS22220 0.77 -1.4 544,657 + -2.4 544,800 - +0.3 544,800 - -0.9 544,861 + -1.2 544,879 + +1.1 544,880 - -0.2 545,116 + BPHYT_RS22225 0.32 -0.2 545,117 - BPHYT_RS22225 0.32 -0.5 545,233 + BPHYT_RS22225 0.53 -2.6 545,234 - BPHYT_RS22225 0.53 -0.3 545,435 + +0.4 545,924 + BPHYT_RS22230 0.50 +0.1 545,925 - BPHYT_RS22230 0.50 -1.4 546,456 + BPHYT_RS22235 0.15 +0.3 546,457 - BPHYT_RS22235 0.15 +1.1 546,477 + -0.6
Or see this region's nucleotide sequence