Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21565 and BPHYT_RS21570 are separated by 376 nucleotides BPHYT_RS21570 and BPHYT_RS21575 are separated by 567 nucleotides BPHYT_RS21575 and BPHYT_RS21580 overlap by 11 nucleotides BPHYT_RS21580 and BPHYT_RS21585 are separated by 8 nucleotides
BPHYT_RS21565: BPHYT_RS21565 - lysine transporter LysE, at 397,332 to 397,955
_RS21565
BPHYT_RS21570: BPHYT_RS21570 - oxidoreductase, at 398,332 to 399,021
_RS21570
BPHYT_RS21575: BPHYT_RS21575 - hypothetical protein, at 399,589 to 399,789
_RS21575
BPHYT_RS21580: BPHYT_RS21580 - hypothetical protein, at 399,779 to 399,967
_RS21580
BPHYT_RS21585: BPHYT_RS21585 - short-chain dehydrogenase, at 399,976 to 400,737
_RS21585
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1
2 at 397.499 kb on - strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.693 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.733 kb on - strand, within BPHYT_RS21565 at 397.948 kb on + strand at 397.948 kb on + strand at 397.948 kb on + strand at 397.949 kb on - strand at 397.997 kb on - strand at 398.167 kb on + strand at 398.168 kb on - strand at 398.168 kb on - strand at 398.170 kb on - strand at 398.389 kb on + strand at 398.390 kb on - strand at 398.495 kb on + strand, within BPHYT_RS21570 at 398.495 kb on + strand, within BPHYT_RS21570 at 398.533 kb on + strand, within BPHYT_RS21570 at 398.533 kb on + strand, within BPHYT_RS21570 at 398.534 kb on - strand, within BPHYT_RS21570 at 398.934 kb on + strand, within BPHYT_RS21570 at 399.118 kb on + strand at 399.119 kb on - strand at 399.258 kb on - strand at 399.468 kb on + strand at 399.627 kb on + strand, within BPHYT_RS21575 at 399.827 kb on + strand, within BPHYT_RS21580
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 397,499 - BPHYT_RS21565 0.27 -0.4 397,534 + BPHYT_RS21565 0.32 +0.3 397,534 + BPHYT_RS21565 0.32 -1.1 397,534 + BPHYT_RS21565 0.32 -1.0 397,693 + BPHYT_RS21565 0.58 +2.3 397,732 + BPHYT_RS21565 0.64 +0.2 397,732 + BPHYT_RS21565 0.64 -0.3 397,733 - BPHYT_RS21565 0.64 +1.0 397,948 + -0.9 397,948 + -0.3 397,948 + -0.1 397,949 - -0.5 397,997 - -0.1 398,167 + -1.0 398,168 - -0.4 398,168 - +0.3 398,170 - +1.8 398,389 + -0.1 398,390 - +1.3 398,495 + BPHYT_RS21570 0.24 +1.2 398,495 + BPHYT_RS21570 0.24 +0.1 398,533 + BPHYT_RS21570 0.29 -0.1 398,533 + BPHYT_RS21570 0.29 -1.3 398,534 - BPHYT_RS21570 0.29 -0.4 398,934 + BPHYT_RS21570 0.87 -0.5 399,118 + +2.0 399,119 - -1.7 399,258 - -1.6 399,468 + -1.2 399,627 + BPHYT_RS21575 0.19 -0.4 399,827 + BPHYT_RS21580 0.25 -1.8
Or see this region's nucleotide sequence