Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20835

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20830 and BPHYT_RS20835 are separated by 155 nucleotidesBPHYT_RS20835 and BPHYT_RS20840 are separated by 97 nucleotides BPHYT_RS20830: BPHYT_RS20830 - electron transfer flavoprotein subunit beta, at 235,852 to 236,784 _RS20830 BPHYT_RS20835: BPHYT_RS20835 - pyridoxal 4-dehydrogenase, at 236,940 to 237,956 _RS20835 BPHYT_RS20840: BPHYT_RS20840 - beta-lactamase, at 238,054 to 239,124 _RS20840 Position (kb) 236 237 238Strain fitness (log2 ratio) -1 0 1 2at 236.101 kb on + strand, within BPHYT_RS20830at 236.479 kb on + strand, within BPHYT_RS20830at 236.614 kb on + strand, within BPHYT_RS20830at 236.862 kb on + strandat 236.961 kb on - strandat 237.023 kb on + strandat 237.813 kb on - strand, within BPHYT_RS20835at 237.824 kb on + strand, within BPHYT_RS20835at 237.825 kb on - strand, within BPHYT_RS20835at 238.469 kb on - strand, within BPHYT_RS20840at 238.906 kb on + strand, within BPHYT_RS20840

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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236,101 + BPHYT_RS20830 0.27 -0.9
236,479 + BPHYT_RS20830 0.67 -0.7
236,614 + BPHYT_RS20830 0.82 -0.6
236,862 + -0.7
236,961 - -0.5
237,023 + +2.1
237,813 - BPHYT_RS20835 0.86 +0.2
237,824 + BPHYT_RS20835 0.87 -1.2
237,825 - BPHYT_RS20835 0.87 -0.7
238,469 - BPHYT_RS20840 0.39 -1.0
238,906 + BPHYT_RS20840 0.80 +0.4

Or see this region's nucleotide sequence