Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18985

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
4,262,237	+				-0.2
4,262,237	+				-2.1
4,262,238	-				+0.3
4,262,238	-				-0.3
4,262,271	+				+1.2
4,262,271	+				-0.3
4,262,272	-				-0.5
4,262,365	+		BPHYT_RS18980	0.10	+0.3
4,262,366	-		BPHYT_RS18980	0.10	-0.1
4,262,404	+		BPHYT_RS18980	0.14	-0.7
4,262,405	-		BPHYT_RS18980	0.14	+1.0
4,262,504	-		BPHYT_RS18980	0.25	+0.7
4,262,704	+		BPHYT_RS18980	0.46	-0.1
4,262,705	-		BPHYT_RS18980	0.46	+0.0
4,262,705	-		BPHYT_RS18980	0.46	-0.4
4,263,058	+		BPHYT_RS18980	0.83	-0.0
4,263,059	-		BPHYT_RS18980	0.83	+3.5
4,263,243	+		BPHYT_RS18985	0.11	-2.8
4,263,243	+		BPHYT_RS18985	0.11	-0.4
4,263,283	+		BPHYT_RS18985	0.32	-1.7
4,263,284	-		BPHYT_RS18985	0.33	-2.8
4,263,430	+				-0.1
4,263,431	-				+2.4
4,263,590	+				+0.6
4,263,717	-		BPHYT_RS18990	0.16	+0.7
4,264,157	+		BPHYT_RS18990	0.39	-0.0
4,264,157	+		BPHYT_RS18990	0.39	+0.2