Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15190

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
3,455,154	+				+0.2
3,455,164	+				-1.5
3,455,164	+				+1.3
3,455,164	+				+1.3
3,455,165	-				+1.9
3,455,165	-				-0.8
3,455,301	+		BPHYT_RS15180	0.13	+0.5
3,455,302	-		BPHYT_RS15180	0.13	+0.7
3,455,302	-		BPHYT_RS15180	0.13	+0.4
3,455,320	-		BPHYT_RS15180	0.16	-1.6
3,455,358	+		BPHYT_RS15180	0.22	+0.5
3,455,419	+		BPHYT_RS15180	0.31	-0.4
3,455,419	+		BPHYT_RS15180	0.31	-0.8
3,455,420	-		BPHYT_RS15180	0.31	+0.8
3,456,132	-				-1.3
3,456,132	-				+0.5
3,456,263	+		BPHYT_RS15190	0.44	+0.4
3,456,264	-		BPHYT_RS15190	0.45	+1.1
3,456,448	+				+0.3
3,456,478	+				-2.4
3,456,742	+		BPHYT_RS15195	0.43	+0.2
3,456,742	+		BPHYT_RS15195	0.43	+1.0
3,456,743	-		BPHYT_RS15195	0.43	+0.0
3,456,743	-		BPHYT_RS15195	0.43	+0.3
3,456,743	-		BPHYT_RS15195	0.43	+0.5
3,456,744	+		BPHYT_RS15195	0.43	+0.1
3,456,744	+		BPHYT_RS15195	0.43	-1.7
3,456,744	+		BPHYT_RS15195	0.43	-2.0
3,456,745	-		BPHYT_RS15195	0.43	-0.3
3,456,807	+		BPHYT_RS15195	0.51	+2.8
3,456,905	+		BPHYT_RS15195	0.63	+0.5
3,456,905	+		BPHYT_RS15195	0.63	+0.4
3,456,915	+		BPHYT_RS15195	0.64	-0.5
3,456,916	-		BPHYT_RS15195	0.64	+0.5
3,456,916	-		BPHYT_RS15195	0.64	+0.0
3,456,916	-		BPHYT_RS15195	0.64	+0.7
3,456,916	-		BPHYT_RS15195	0.64	+0.4
3,457,175	+				-1.1
3,457,176	-				-0.9
3,457,176	-				-1.6
3,457,176	-				-0.0
3,457,180	-				+0.6
3,457,180	-				-0.2
3,457,384	+		BPHYT_RS15200	0.26	-0.5
3,457,385	-		BPHYT_RS15200	0.26	-1.3