Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14975

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
3,403,657	-				+0.4
3,403,657	-				-0.5
3,403,793	-				-0.6
3,403,846	+				+1.2
3,403,847	-				-2.6
3,403,854	+				-2.4
3,403,854	+				+0.1
3,403,865	+				-2.2
3,403,865	+				-0.5
3,403,866	-				+0.2
3,403,931	+				-0.8
3,404,128	-				+0.0
3,404,187	+		BPHYT_RS14970	0.47	-1.0
3,404,187	+		BPHYT_RS14970	0.47	-0.7
3,404,188	-		BPHYT_RS14970	0.48	+0.1
3,404,277	+		BPHYT_RS14970	0.72	+1.2
3,404,277	+		BPHYT_RS14970	0.72	-1.1
3,404,278	-		BPHYT_RS14970	0.73	-1.3
3,404,278	-		BPHYT_RS14970	0.73	+2.2
3,404,302	-		BPHYT_RS14970	0.79	+0.1
3,404,392	+				-1.8
3,404,393	-				-0.3
3,404,402	-				-0.4
3,404,402	-				+0.9
3,404,494	+				-0.5
3,404,494	+				+2.7
3,404,587	+		BPHYT_RS14975	0.39	-0.4
3,404,587	+				+0.4
3,404,588	-		BPHYT_RS14975	0.39	-0.1
3,404,588	-		BPHYT_RS14975	0.39	+0.2
3,404,749	+				-2.2
3,404,767	-				+1.0
3,404,796	+				-0.1
3,404,796	+				+0.3
3,404,797	-				+2.8
3,404,835	+				-0.3
3,404,835	+				-1.0
3,404,835	+				-1.7
3,404,897	+				-0.3
3,404,922	+				+1.3
3,404,923	-				+0.5
3,404,923	-				-0.4
3,404,995	+		BPHYT_RS14980	0.13	+0.7
3,404,996	-		BPHYT_RS14980	0.13	-1.1
3,404,996	-		BPHYT_RS14980	0.13	-1.1
3,405,030	+		BPHYT_RS14980	0.16	+0.6
3,405,162	+		BPHYT_RS14980	0.28	-1.3
3,405,220	+		BPHYT_RS14980	0.34	+0.6
3,405,220	+		BPHYT_RS14980	0.34	+0.0
3,405,220	+		BPHYT_RS14980	0.34	-2.3
3,405,221	-		BPHYT_RS14980	0.34	-2.1
3,405,221	-		BPHYT_RS14980	0.34	-1.4
3,405,348	-		BPHYT_RS14980	0.45	+0.3