Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14245

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
3,253,565	-				-0.7
3,253,607	+				-0.9
3,253,665	-				-0.9
3,253,665	-				-1.0
3,253,725	-				-1.5
3,253,725	-				-2.8
3,253,768	-				-0.1
3,253,853	-				+0.9
3,253,915	-		BPHYT_RS14240	0.22	-2.8
3,253,915	-		BPHYT_RS14240	0.22	+1.0
3,254,058	+		BPHYT_RS14240	0.52	+0.9
3,254,058	+		BPHYT_RS14240	0.52	-0.6
3,254,059	-		BPHYT_RS14240	0.53	-0.8
3,254,236	-				+0.8
3,254,302	+				-2.1
3,254,303	-				-0.0
3,254,303	-				+0.6
3,254,313	+				+0.6
3,254,313	+				+0.5
3,254,313	+				+0.5
3,254,313	+				-1.4
3,254,313	+				+0.4
3,254,314	-				-0.7
3,254,314	-				-1.3
3,254,314	-				-0.1
3,254,314	-				+0.4
3,254,314	-				-0.1
3,254,378	+				+0.5
3,254,687	+		BPHYT_RS14245	0.30	-0.3
3,254,688	-		BPHYT_RS14245	0.30	-0.7
3,255,343	-				-0.9
3,255,344	+				-1.1
3,255,344	+				+0.0
3,255,344	+				+0.9
3,255,345	-				-1.2
3,255,345	-				-0.8
3,255,345	-				+0.9
3,255,345	-				+0.4
3,255,345	-				-0.6
3,255,350	+				-0.7
3,255,351	-				+0.3
3,255,351	-				-0.1
3,255,353	+				+0.2
3,255,519	-				+0.2
3,255,519	-				+1.7
3,255,590	-				+0.6
3,255,590	-				+1.0
3,255,590	-				+0.9
3,255,602	-				+1.2
3,255,602	-				-0.8
3,255,602	-				+0.4
3,255,908	-		BPHYT_RS14250	0.35	+0.9
3,255,952	+		BPHYT_RS14250	0.40	-0.3
3,255,953	-		BPHYT_RS14250	0.40	+0.3
3,255,955	+		BPHYT_RS14250	0.40	+2.3
3,256,076	-		BPHYT_RS14250	0.51	+0.4
3,256,211	+		BPHYT_RS14250	0.64	+0.9
3,256,212	-		BPHYT_RS14250	0.64	+0.8