Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12250

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
2,798,917	+				-1.7
2,798,917	+				-1.2
2,798,918	-				-0.7
2,799,018	+				+1.1
2,799,197	+				-0.8
2,799,198	-				+1.7
2,799,198	-				-0.4
2,799,219	+				-0.1
2,799,220	-				+0.4
2,799,220	-				-0.9
2,799,344	+		BPHYT_RS12255	0.19	+1.2
2,799,344	+		BPHYT_RS12255	0.19	+1.0
2,799,344	+		BPHYT_RS12255	0.19	-1.4
2,799,344	+		BPHYT_RS12255	0.19	-0.8
2,799,345	-		BPHYT_RS12255	0.20	-1.8
2,799,345	-		BPHYT_RS12255	0.20	+1.0
2,799,345	-		BPHYT_RS12255	0.20	-0.1
2,799,345	-		BPHYT_RS12255	0.20	+0.4
2,799,345	-		BPHYT_RS12255	0.20	+0.6
2,799,652	+		BPHYT_RS12255	0.50	+0.9
2,799,673	-		BPHYT_RS12255	0.52	-0.8
2,799,703	+		BPHYT_RS12255	0.55	-0.8
2,799,703	+		BPHYT_RS12255	0.55	+0.4
2,799,703	+		BPHYT_RS12255	0.55	-1.1
2,799,703	+		BPHYT_RS12255	0.55	-0.6
2,799,703	+		BPHYT_RS12255	0.55	-2.0