Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11565

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11560 and BPHYT_RS11565 are separated by 26 nucleotidesBPHYT_RS11565 and BPHYT_RS11570 are separated by 333 nucleotides BPHYT_RS11560: BPHYT_RS11560 - Asp/Glu racemase, at 2,627,605 to 2,628,471 _RS11560 BPHYT_RS11565: BPHYT_RS11565 - nitrate reductase, at 2,628,498 to 2,629,979 _RS11565 BPHYT_RS11570: BPHYT_RS11570 - GntR family transcriptional regulator, at 2,630,313 to 2,631,053 _RS11570 Position (kb) 2628 2629 2630Strain fitness (log2 ratio) -1 0 1at 2627.583 kb on - strandat 2627.597 kb on - strandat 2627.995 kb on - strand, within BPHYT_RS11560at 2628.471 kb on + strandat 2628.518 kb on - strandat 2629.546 kb on + strand, within BPHYT_RS11565at 2629.776 kb on + strand, within BPHYT_RS11565at 2629.934 kb on - strandat 2630.061 kb on + strandat 2630.122 kb on + strandat 2630.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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2,627,583 - +0.6
2,627,597 - +0.8
2,627,995 - BPHYT_RS11560 0.45 -1.5
2,628,471 + -0.2
2,628,518 - -0.6
2,629,546 + BPHYT_RS11565 0.71 -0.6
2,629,776 + BPHYT_RS11565 0.86 -1.4
2,629,934 - -1.1
2,630,061 + +0.3
2,630,122 + -0.7
2,630,122 + +0.3

Or see this region's nucleotide sequence