Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11565
Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P. phyto PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,627,583 | - | +0.6 | |||
2,627,597 | - | +0.8 | |||
2,627,995 | - | BPHYT_RS11560 | 0.45 | -1.5 | |
2,628,471 | + | -0.2 | |||
2,628,518 | - | -0.6 | |||
2,629,546 | + | BPHYT_RS11565 | 0.71 | -0.6 | |
2,629,776 | + | BPHYT_RS11565 | 0.86 | -1.4 | |
2,629,934 | - | -1.1 | |||
2,630,061 | + | +0.3 | |||
2,630,122 | + | -0.7 | |||
2,630,122 | + | +0.3 |
Or see this region's nucleotide sequence