Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10760

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10750 and BPHYT_RS10755 are separated by 119 nucleotidesBPHYT_RS10755 and BPHYT_RS10760 overlap by 2 nucleotidesBPHYT_RS10760 and BPHYT_RS10765 are separated by 45 nucleotides BPHYT_RS10750: BPHYT_RS10750 - LysR family transcriptional regulator, at 2,444,640 to 2,445,572 _RS10750 BPHYT_RS10755: BPHYT_RS10755 - hypothetical protein, at 2,445,692 to 2,445,892 _RS10755 BPHYT_RS10760: BPHYT_RS10760 - major facilitator transporter, at 2,445,891 to 2,447,213 _RS10760 BPHYT_RS10765: BPHYT_RS10765 - amidase, at 2,447,259 to 2,448,722 _RS10765 Position (kb) 2445 2446 2447 2448Strain fitness (log2 ratio) -3 -2 -1 0 1at 2445.655 kb on - strandat 2446.455 kb on + strand, within BPHYT_RS10760at 2446.537 kb on - strand, within BPHYT_RS10760at 2446.719 kb on + strand, within BPHYT_RS10760at 2446.897 kb on - strand, within BPHYT_RS10760at 2446.933 kb on - strand, within BPHYT_RS10760at 2447.375 kb on - strandat 2447.713 kb on + strand, within BPHYT_RS10765

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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2,445,655 - +1.6
2,446,455 + BPHYT_RS10760 0.43 -1.4
2,446,537 - BPHYT_RS10760 0.49 -0.4
2,446,719 + BPHYT_RS10760 0.63 -0.8
2,446,897 - BPHYT_RS10760 0.76 -2.0
2,446,933 - BPHYT_RS10760 0.79 -2.2
2,447,375 - +0.7
2,447,713 + BPHYT_RS10765 0.31 -2.8

Or see this region's nucleotide sequence