Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09000

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
2,036,929	+		BPHYT_RS08995	0.48	-0.1
2,036,930	-		BPHYT_RS08995	0.48	-0.6
2,037,303	+				-0.9
2,037,304	-				+1.6
2,037,365	+				+0.6
2,037,610	-		BPHYT_RS09000	0.41	-2.4
2,037,943	+				-0.3
2,037,943	+				-2.0
2,037,944	-				+1.7
2,037,944	-				+2.7
2,037,944	-				+0.1
2,037,944	-				-0.5
2,038,055	-				+3.4
2,038,060	+				+1.3
2,038,061	-				-0.2
2,038,166	-				+2.2
2,038,203	+				+0.9
2,038,248	+				-2.0
2,038,291	+				+0.4
2,038,348	+		BPHYT_RS09005	0.13	-0.1
2,038,348	+		BPHYT_RS09005	0.13	-2.5
2,038,349	-		BPHYT_RS09005	0.13	+1.2
2,038,361	+		BPHYT_RS09005	0.16	+0.5
2,038,418	+		BPHYT_RS09005	0.27	+0.2
2,038,634	+		BPHYT_RS09005	0.71	+0.4
2,038,637	+		BPHYT_RS09005	0.72	+0.1
2,038,638	-		BPHYT_RS09005	0.72	-0.5
2,038,638	-		BPHYT_RS09005	0.72	-0.4
2,038,850	+		BPHYT_RS09010	0.26	+0.7