Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08380

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08375 and BPHYT_RS08380 are separated by 486 nucleotidesBPHYT_RS08380 and BPHYT_RS08385 are separated by 137 nucleotides BPHYT_RS08375: BPHYT_RS08375 - enoyl-CoA hydratase, at 1,918,405 to 1,919,268 _RS08375 BPHYT_RS08380: BPHYT_RS08380 - multidrug MFS transporter, at 1,919,755 to 1,921,080 _RS08380 BPHYT_RS08385: BPHYT_RS08385 - secretion protein, at 1,921,218 to 1,922,756 _RS08385 Position (kb) 1919 1920 1921 1922Strain fitness (log2 ratio) -1 0 1 2at 1919.431 kb on - strandat 1919.693 kb on - strandat 1919.871 kb on + strandat 1919.872 kb on - strandat 1920.419 kb on - strand, within BPHYT_RS08380at 1921.093 kb on - strandat 1921.184 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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1,919,431 - -0.3
1,919,693 - -0.2
1,919,871 + -0.9
1,919,872 - +0.8
1,920,419 - BPHYT_RS08380 0.50 +0.5
1,921,093 - +2.1
1,921,184 - -0.8

Or see this region's nucleotide sequence