Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08085

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
1,843,554	+		BPHYT_RS08080	0.12	-0.6
1,843,667	+		BPHYT_RS08080	0.24	+1.0
1,843,751	-		BPHYT_RS08080	0.33	+0.5
1,843,824	+		BPHYT_RS08080	0.41	-0.0
1,843,825	-		BPHYT_RS08080	0.41	+0.7
1,843,857	+		BPHYT_RS08080	0.45	+0.1
1,843,951	+		BPHYT_RS08080	0.55	+0.8
1,843,983	+		BPHYT_RS08080	0.58	+0.6
1,843,983	+		BPHYT_RS08080	0.58	+0.9
1,843,983	+		BPHYT_RS08080	0.58	-0.1
1,843,984	-		BPHYT_RS08080	0.58	-0.3
1,843,984	-		BPHYT_RS08080	0.58	+0.6
1,843,984	-		BPHYT_RS08080	0.58	-3.2
1,843,984	-		BPHYT_RS08080	0.58	-2.9
1,843,984	-		BPHYT_RS08080	0.58	+0.9
1,843,984	-		BPHYT_RS08080	0.58	+0.0
1,844,393	+				-0.0
1,844,394	-				-0.4
1,844,394	-				+0.4
1,844,468	-				+2.6
1,844,469	+				+1.1
1,844,474	+				-0.5
1,844,474	+				-1.8
1,844,475	-				+0.9
1,844,737	+		BPHYT_RS08085	0.15	-0.2
1,844,737	+		BPHYT_RS08085	0.15	+1.1
1,844,897	+		BPHYT_RS08085	0.25	-1.2
1,844,898	-		BPHYT_RS08085	0.25	+0.8
1,844,898	-		BPHYT_RS08085	0.25	-0.2
1,844,898	-		BPHYT_RS08085	0.25	-0.7
1,844,898	-		BPHYT_RS08085	0.25	+0.3
1,844,952	-		BPHYT_RS08085	0.29	-0.1
1,845,038	+		BPHYT_RS08085	0.34	-0.2
1,845,044	+		BPHYT_RS08085	0.34	+1.3
1,845,148	+		BPHYT_RS08085	0.41	-1.0
1,845,264	+		BPHYT_RS08085	0.49	-0.1
1,845,265	-		BPHYT_RS08085	0.49	-2.1
1,845,658	+		BPHYT_RS08085	0.74	-0.3
1,845,658	+		BPHYT_RS08085	0.74	+0.8
1,845,658	+		BPHYT_RS08085	0.74	-0.8
1,845,720	+		BPHYT_RS08085	0.78	-0.2
1,845,721	-		BPHYT_RS08085	0.78	+0.3
1,846,100	+				-0.3
1,846,101	-				-1.6
1,846,101	-				-2.5
1,846,101	-				+0.3
1,846,101	-				-0.9
1,846,220	+				+1.0
1,846,245	-		BPHYT_RS08090	0.11	+1.2
1,846,251	+		BPHYT_RS08090	0.12	+2.7
1,846,497	-		BPHYT_RS08090	0.31	-0.4
1,846,549	+		BPHYT_RS08090	0.35	+1.6
1,846,549	+		BPHYT_RS08090	0.35	-0.2
1,846,549	+		BPHYT_RS08090	0.35	-0.9