Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04620 and BPHYT_RS04625 are separated by 32 nucleotides BPHYT_RS04625 and BPHYT_RS04630 overlap by 4 nucleotides BPHYT_RS04630 and BPHYT_RS04635 are separated by 1 nucleotides
BPHYT_RS04620: BPHYT_RS04620 - urea ABC transporter ATP-binding protein, at 1,069,875 to 1,070,567
_RS04620
BPHYT_RS04625: BPHYT_RS04625 - urea ABC transporter ATP-binding protein, at 1,070,600 to 1,071,466
_RS04625
BPHYT_RS04630: BPHYT_RS04630 - amino acid ABC transporter permease, at 1,071,463 to 1,072,647
_RS04630
BPHYT_RS04635: BPHYT_RS04635 - urea ABC transporter permease, at 1,072,649 to 1,074,220
_RS04635
Position (kb) 1071
1072
1073 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1070.540 kb on - strand at 1070.540 kb on - strand at 1070.562 kb on + strand at 1070.562 kb on + strand at 1070.614 kb on - strand at 1071.163 kb on - strand, within BPHYT_RS04625 at 1071.331 kb on - strand, within BPHYT_RS04625 at 1071.569 kb on + strand at 1071.737 kb on + strand, within BPHYT_RS04630 at 1071.810 kb on - strand, within BPHYT_RS04630 at 1072.286 kb on + strand, within BPHYT_RS04630 at 1072.608 kb on + strand at 1072.866 kb on + strand, within BPHYT_RS04635 at 1072.866 kb on + strand, within BPHYT_RS04635 at 1072.867 kb on - strand, within BPHYT_RS04635 at 1072.867 kb on - strand, within BPHYT_RS04635 at 1072.867 kb on - strand, within BPHYT_RS04635 at 1072.867 kb on - strand, within BPHYT_RS04635 at 1072.957 kb on - strand, within BPHYT_RS04635 at 1073.113 kb on - strand, within BPHYT_RS04635 at 1073.135 kb on + strand, within BPHYT_RS04635 at 1073.403 kb on + strand, within BPHYT_RS04635 at 1073.403 kb on + strand, within BPHYT_RS04635 at 1073.403 kb on + strand, within BPHYT_RS04635
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 1,070,540 - +0.5 1,070,540 - +0.1 1,070,562 + -0.1 1,070,562 + -0.3 1,070,614 - -1.0 1,071,163 - BPHYT_RS04625 0.65 -1.9 1,071,331 - BPHYT_RS04625 0.84 +1.3 1,071,569 + -0.0 1,071,737 + BPHYT_RS04630 0.23 +1.1 1,071,810 - BPHYT_RS04630 0.29 -2.6 1,072,286 + BPHYT_RS04630 0.69 +1.0 1,072,608 + -0.3 1,072,866 + BPHYT_RS04635 0.14 +1.0 1,072,866 + BPHYT_RS04635 0.14 -0.4 1,072,867 - BPHYT_RS04635 0.14 +0.9 1,072,867 - BPHYT_RS04635 0.14 -0.0 1,072,867 - BPHYT_RS04635 0.14 -1.5 1,072,867 - BPHYT_RS04635 0.14 +0.7 1,072,957 - BPHYT_RS04635 0.20 -0.6 1,073,113 - BPHYT_RS04635 0.30 -0.1 1,073,135 + BPHYT_RS04635 0.31 -2.8 1,073,403 + BPHYT_RS04635 0.48 -1.2 1,073,403 + BPHYT_RS04635 0.48 +0.4 1,073,403 + BPHYT_RS04635 0.48 -3.4
Or see this region's nucleotide sequence