Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04290 and BPHYT_RS04295 are separated by 225 nucleotides BPHYT_RS04295 and BPHYT_RS04300 are separated by 56 nucleotides
BPHYT_RS04290: BPHYT_RS04290 - glycosyl transferase family 2, at 981,989 to 983,914
_RS04290
BPHYT_RS04295: BPHYT_RS04295 - ABC transporter, at 984,140 to 984,928
_RS04295
BPHYT_RS04300: BPHYT_RS04300 - family 2 glycosyl transferase, at 984,985 to 987,438
_RS04300
Position (kb) 984
985 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 983.714 kb on + strand, within BPHYT_RS04290 at 983.762 kb on + strand at 984.273 kb on - strand, within BPHYT_RS04295 at 984.286 kb on + strand, within BPHYT_RS04295 at 984.324 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.479 kb on - strand, within BPHYT_RS04295 at 984.623 kb on + strand, within BPHYT_RS04295 at 984.647 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.699 kb on - strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295 at 985.236 kb on + strand, within BPHYT_RS04300 at 985.236 kb on + strand, within BPHYT_RS04300 at 985.237 kb on - strand, within BPHYT_RS04300 at 985.281 kb on + strand, within BPHYT_RS04300 at 985.282 kb on - strand, within BPHYT_RS04300 at 985.282 kb on - strand, within BPHYT_RS04300 at 985.282 kb on - strand, within BPHYT_RS04300 at 985.330 kb on + strand, within BPHYT_RS04300 at 985.537 kb on + strand, within BPHYT_RS04300 at 985.537 kb on + strand, within BPHYT_RS04300 at 985.538 kb on - strand, within BPHYT_RS04300 at 985.540 kb on + strand, within BPHYT_RS04300 at 985.679 kb on + strand, within BPHYT_RS04300 at 985.679 kb on + strand, within BPHYT_RS04300 at 985.681 kb on + strand, within BPHYT_RS04300 at 985.681 kb on + strand, within BPHYT_RS04300 at 985.681 kb on + strand, within BPHYT_RS04300 at 985.682 kb on - strand, within BPHYT_RS04300 at 985.682 kb on - strand, within BPHYT_RS04300 at 985.683 kb on + strand, within BPHYT_RS04300 at 985.683 kb on + strand, within BPHYT_RS04300 at 985.683 kb on + strand, within BPHYT_RS04300 at 985.684 kb on - strand, within BPHYT_RS04300 at 985.684 kb on - strand, within BPHYT_RS04300
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 983,714 + BPHYT_RS04290 0.90 +2.2 983,762 + +2.2 984,273 - BPHYT_RS04295 0.17 +0.8 984,286 + BPHYT_RS04295 0.19 -1.8 984,324 + BPHYT_RS04295 0.23 +0.9 984,371 + BPHYT_RS04295 0.29 -1.0 984,371 + BPHYT_RS04295 0.29 +1.1 984,371 + BPHYT_RS04295 0.29 +0.9 984,372 - BPHYT_RS04295 0.29 +2.2 984,372 - BPHYT_RS04295 0.29 +1.7 984,478 + BPHYT_RS04295 0.43 +0.4 984,478 + BPHYT_RS04295 0.43 -0.2 984,479 - BPHYT_RS04295 0.43 +1.5 984,623 + BPHYT_RS04295 0.61 +0.9 984,647 + BPHYT_RS04295 0.64 -0.4 984,698 + BPHYT_RS04295 0.71 +1.7 984,698 + BPHYT_RS04295 0.71 +0.0 984,699 - BPHYT_RS04295 0.71 -0.8 984,841 + BPHYT_RS04295 0.89 -0.0 984,841 + BPHYT_RS04295 0.89 -4.5 985,236 + BPHYT_RS04300 0.10 +2.3 985,236 + BPHYT_RS04300 0.10 -0.8 985,237 - BPHYT_RS04300 0.10 +0.8 985,281 + BPHYT_RS04300 0.12 +2.0 985,282 - BPHYT_RS04300 0.12 +0.7 985,282 - BPHYT_RS04300 0.12 +1.2 985,282 - BPHYT_RS04300 0.12 +0.7 985,330 + BPHYT_RS04300 0.14 +2.2 985,537 + BPHYT_RS04300 0.22 +3.1 985,537 + BPHYT_RS04300 0.22 -2.3 985,538 - BPHYT_RS04300 0.23 -0.8 985,540 + BPHYT_RS04300 0.23 -0.3 985,679 + BPHYT_RS04300 0.28 +1.0 985,679 + BPHYT_RS04300 0.28 +1.1 985,681 + BPHYT_RS04300 0.28 +1.7 985,681 + BPHYT_RS04300 0.28 +2.2 985,681 + BPHYT_RS04300 0.28 +1.7 985,682 - BPHYT_RS04300 0.28 +3.0 985,682 - BPHYT_RS04300 0.28 +2.1 985,683 + BPHYT_RS04300 0.28 +2.4 985,683 + BPHYT_RS04300 0.28 +1.8 985,683 + BPHYT_RS04300 0.28 +0.7 985,684 - BPHYT_RS04300 0.28 -0.1 985,684 - BPHYT_RS04300 0.28 +3.3
Or see this region's nucleotide sequence