Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04165 and BPHYT_RS04170 are separated by 38 nucleotides BPHYT_RS04170 and BPHYT_RS04175 are separated by 309 nucleotides BPHYT_RS04175 and BPHYT_RS04180 are separated by 432 nucleotides
BPHYT_RS04165: BPHYT_RS04165 - hypothetical protein, at 956,368 to 956,772
_RS04165
BPHYT_RS04170: BPHYT_RS04170 - hypothetical protein, at 956,811 to 957,092
_RS04170
BPHYT_RS04175: BPHYT_RS04175 - hypothetical protein, at 957,402 to 958,118
_RS04175
BPHYT_RS04180: BPHYT_RS04180 - sugar ABC transporter substrate-binding protein, at 958,551 to 959,798
_RS04180
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 956.405 kb on - strand at 956.527 kb on + strand, within BPHYT_RS04165 at 956.527 kb on + strand, within BPHYT_RS04165 at 956.619 kb on + strand, within BPHYT_RS04165 at 956.772 kb on + strand at 956.772 kb on + strand at 956.772 kb on + strand at 956.800 kb on - strand at 956.872 kb on - strand, within BPHYT_RS04170 at 956.968 kb on + strand, within BPHYT_RS04170 at 956.969 kb on - strand, within BPHYT_RS04170 at 957.104 kb on + strand at 957.249 kb on + strand at 957.352 kb on - strand at 957.508 kb on + strand, within BPHYT_RS04175 at 957.508 kb on + strand, within BPHYT_RS04175 at 957.508 kb on + strand, within BPHYT_RS04175 at 957.509 kb on - strand, within BPHYT_RS04175 at 957.601 kb on + strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.872 kb on - strand, within BPHYT_RS04175 at 957.917 kb on - strand, within BPHYT_RS04175 at 957.958 kb on - strand, within BPHYT_RS04175 at 958.096 kb on + strand at 958.096 kb on + strand at 958.202 kb on + strand at 958.367 kb on + strand at 958.368 kb on - strand at 958.389 kb on + strand at 958.447 kb on + strand at 958.492 kb on + strand at 958.552 kb on + strand at 958.638 kb on - strand at 958.730 kb on - strand, within BPHYT_RS04180 at 958.798 kb on + strand, within BPHYT_RS04180 at 958.799 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.934 kb on + strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 956,405 - -0.1 956,527 + BPHYT_RS04165 0.39 +0.9 956,527 + BPHYT_RS04165 0.39 -0.1 956,619 + BPHYT_RS04165 0.62 -0.8 956,772 + -0.4 956,772 + -1.2 956,772 + -2.3 956,800 - +0.6 956,872 - BPHYT_RS04170 0.22 +0.4 956,968 + BPHYT_RS04170 0.56 +0.6 956,969 - BPHYT_RS04170 0.56 +0.1 957,104 + -0.7 957,249 + -0.8 957,352 - -0.1 957,508 + BPHYT_RS04175 0.15 +1.3 957,508 + BPHYT_RS04175 0.15 +0.3 957,508 + BPHYT_RS04175 0.15 +0.4 957,509 - BPHYT_RS04175 0.15 -0.8 957,601 + BPHYT_RS04175 0.28 -0.4 957,669 - BPHYT_RS04175 0.37 +3.8 957,669 - BPHYT_RS04175 0.37 +0.4 957,697 + BPHYT_RS04175 0.41 +0.8 957,697 + BPHYT_RS04175 0.41 +0.9 957,872 - BPHYT_RS04175 0.66 +0.3 957,917 - BPHYT_RS04175 0.72 -0.9 957,958 - BPHYT_RS04175 0.78 +0.9 958,096 + +0.5 958,096 + -0.2 958,202 + -2.2 958,367 + +1.1 958,368 - -1.5 958,389 + -1.9 958,447 + -0.1 958,492 + +0.2 958,552 + -1.5 958,638 - -1.0 958,730 - BPHYT_RS04180 0.14 +0.5 958,798 + BPHYT_RS04180 0.20 -2.1 958,799 - BPHYT_RS04180 0.20 +1.2 958,916 - BPHYT_RS04180 0.29 +0.8 958,916 - BPHYT_RS04180 0.29 -0.2 958,934 + BPHYT_RS04180 0.31 +1.2 958,956 - BPHYT_RS04180 0.32 +0.6 958,956 - BPHYT_RS04180 0.32 +0.6
Or see this region's nucleotide sequence