Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03505 and BPHYT_RS03510 are separated by 149 nucleotides BPHYT_RS03510 and BPHYT_RS03515 are separated by 69 nucleotides
BPHYT_RS03505: BPHYT_RS03505 - FAD-binding protein, at 790,171 to 791,259
_RS03505
BPHYT_RS03510: BPHYT_RS03510 - FAD-binding protein, at 791,409 to 792,902
_RS03510
BPHYT_RS03515: BPHYT_RS03515 - D-lactate dehydrogenase, at 792,972 to 794,387
_RS03515
Position (kb) 791
792
793 Strain fitness (log2 ratio) -1
0
1
2 at 790.975 kb on - strand, within BPHYT_RS03505 at 790.975 kb on - strand, within BPHYT_RS03505 at 791.096 kb on + strand, within BPHYT_RS03505 at 791.096 kb on + strand, within BPHYT_RS03505 at 791.097 kb on - strand, within BPHYT_RS03505 at 791.292 kb on + strand at 791.403 kb on - strand at 791.779 kb on + strand, within BPHYT_RS03510 at 791.780 kb on - strand, within BPHYT_RS03510 at 791.780 kb on - strand, within BPHYT_RS03510 at 791.822 kb on + strand, within BPHYT_RS03510 at 791.854 kb on + strand, within BPHYT_RS03510 at 791.854 kb on + strand, within BPHYT_RS03510 at 791.854 kb on + strand, within BPHYT_RS03510 at 791.857 kb on + strand, within BPHYT_RS03510 at 791.858 kb on - strand, within BPHYT_RS03510 at 791.871 kb on - strand, within BPHYT_RS03510 at 792.033 kb on + strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.377 kb on + strand, within BPHYT_RS03510 at 792.377 kb on + strand, within BPHYT_RS03510 at 792.394 kb on + strand, within BPHYT_RS03510 at 792.479 kb on - strand, within BPHYT_RS03510 at 792.482 kb on - strand, within BPHYT_RS03510 at 792.491 kb on - strand, within BPHYT_RS03510 at 792.556 kb on + strand, within BPHYT_RS03510 at 792.870 kb on + strand at 792.870 kb on + strand at 792.871 kb on - strand at 792.966 kb on + strand at 792.966 kb on + strand at 792.966 kb on + strand at 793.037 kb on + strand at 793.626 kb on + strand, within BPHYT_RS03515 at 793.720 kb on + strand, within BPHYT_RS03515 at 793.793 kb on - strand, within BPHYT_RS03515 at 793.897 kb on - strand, within BPHYT_RS03515
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 790,975 - BPHYT_RS03505 0.74 -1.1 790,975 - BPHYT_RS03505 0.74 +0.8 791,096 + BPHYT_RS03505 0.85 -0.9 791,096 + BPHYT_RS03505 0.85 +0.3 791,097 - BPHYT_RS03505 0.85 -1.0 791,292 + +1.8 791,403 - +0.8 791,779 + BPHYT_RS03510 0.25 +0.2 791,780 - BPHYT_RS03510 0.25 -0.1 791,780 - BPHYT_RS03510 0.25 -0.1 791,822 + BPHYT_RS03510 0.28 +0.0 791,854 + BPHYT_RS03510 0.30 +1.0 791,854 + BPHYT_RS03510 0.30 +0.3 791,854 + BPHYT_RS03510 0.30 +0.8 791,857 + BPHYT_RS03510 0.30 +0.1 791,858 - BPHYT_RS03510 0.30 +0.3 791,871 - BPHYT_RS03510 0.31 -0.2 792,033 + BPHYT_RS03510 0.42 +1.0 792,034 - BPHYT_RS03510 0.42 +2.0 792,034 - BPHYT_RS03510 0.42 -0.7 792,034 - BPHYT_RS03510 0.42 -0.4 792,377 + BPHYT_RS03510 0.65 +0.0 792,377 + BPHYT_RS03510 0.65 +0.0 792,394 + BPHYT_RS03510 0.66 +0.1 792,479 - BPHYT_RS03510 0.72 -0.0 792,482 - BPHYT_RS03510 0.72 -0.6 792,491 - BPHYT_RS03510 0.72 -0.2 792,556 + BPHYT_RS03510 0.77 -0.3 792,870 + -0.6 792,870 + -0.3 792,871 - +0.5 792,966 + +0.7 792,966 + +1.0 792,966 + -0.3 793,037 + -1.5 793,626 + BPHYT_RS03515 0.46 -0.4 793,720 + BPHYT_RS03515 0.53 +0.3 793,793 - BPHYT_RS03515 0.58 +0.4 793,897 - BPHYT_RS03515 0.65 +0.1
Or see this region's nucleotide sequence