Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03260 and BPHYT_RS03265 are separated by 195 nucleotides BPHYT_RS03265 and BPHYT_RS03270 are separated by 68 nucleotides BPHYT_RS03270 and BPHYT_RS03275 are separated by 285 nucleotides
BPHYT_RS03260: BPHYT_RS03260 - glycine cleavage system regulatory protein, at 733,931 to 734,860
_RS03260
BPHYT_RS03265: BPHYT_RS03265 - hypothetical protein, at 735,056 to 735,394
_RS03265
BPHYT_RS03270: BPHYT_RS03270 - acyl-CoA hydrolase, at 735,463 to 735,858
_RS03270
BPHYT_RS03275: BPHYT_RS03275 - metal ABC transporter permease, at 736,144 to 738,033
_RS03275
Position (kb) 735
736 Strain fitness (log2 ratio) -2
-1
0
1 at 734.291 kb on + strand, within BPHYT_RS03260 at 734.291 kb on + strand, within BPHYT_RS03260 at 734.729 kb on + strand, within BPHYT_RS03260 at 734.813 kb on + strand at 734.813 kb on + strand at 734.813 kb on + strand at 734.813 kb on + strand at 734.814 kb on - strand at 734.814 kb on - strand at 734.866 kb on - strand at 734.878 kb on - strand at 734.908 kb on - strand at 734.908 kb on - strand at 735.105 kb on + strand, within BPHYT_RS03265 at 735.105 kb on + strand, within BPHYT_RS03265 at 735.106 kb on - strand, within BPHYT_RS03265 at 735.403 kb on + strand at 735.403 kb on + strand at 735.404 kb on - strand at 735.404 kb on - strand at 735.404 kb on - strand at 735.404 kb on - strand at 735.515 kb on + strand, within BPHYT_RS03270 at 735.516 kb on - strand, within BPHYT_RS03270 at 735.516 kb on - strand, within BPHYT_RS03270 at 735.576 kb on - strand, within BPHYT_RS03270 at 735.604 kb on - strand, within BPHYT_RS03270 at 735.629 kb on + strand, within BPHYT_RS03270 at 735.630 kb on - strand, within BPHYT_RS03270 at 735.849 kb on + strand at 735.849 kb on + strand at 735.849 kb on + strand at 735.850 kb on - strand at 736.011 kb on - strand at 736.011 kb on - strand at 736.011 kb on - strand at 736.240 kb on + strand at 736.240 kb on + strand at 736.240 kb on + strand at 736.240 kb on + strand at 736.241 kb on - strand at 736.241 kb on - strand at 736.242 kb on + strand at 736.242 kb on + strand at 736.243 kb on - strand at 736.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 734,291 + BPHYT_RS03260 0.39 +0.2 734,291 + BPHYT_RS03260 0.39 -1.1 734,729 + BPHYT_RS03260 0.86 -0.4 734,813 + -0.2 734,813 + +0.0 734,813 + -0.1 734,813 + -0.2 734,814 - +1.2 734,814 - +0.6 734,866 - -1.6 734,878 - -0.3 734,908 - +0.1 734,908 - -0.7 735,105 + BPHYT_RS03265 0.14 -0.3 735,105 + BPHYT_RS03265 0.14 +0.5 735,106 - BPHYT_RS03265 0.15 -0.1 735,403 + -0.0 735,403 + +0.1 735,404 - -1.9 735,404 - -0.1 735,404 - +0.3 735,404 - -0.3 735,515 + BPHYT_RS03270 0.13 +1.1 735,516 - BPHYT_RS03270 0.13 -0.9 735,516 - BPHYT_RS03270 0.13 -1.7 735,576 - BPHYT_RS03270 0.29 +0.3 735,604 - BPHYT_RS03270 0.36 +0.6 735,629 + BPHYT_RS03270 0.42 -1.3 735,630 - BPHYT_RS03270 0.42 -0.1 735,849 + +1.2 735,849 + -1.2 735,849 + +0.1 735,850 - +0.7 736,011 - -0.6 736,011 - +0.2 736,011 - +0.2 736,240 + -2.7 736,240 + -0.3 736,240 + +0.2 736,240 + +0.3 736,241 - +0.0 736,241 - -0.8 736,242 + -0.6 736,242 + +1.2 736,243 - -0.5 736,243 - -0.3
Or see this region's nucleotide sequence