Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03020 and BPHYT_RS03025 are separated by 299 nucleotides BPHYT_RS03025 and BPHYT_RS03030 are separated by 71 nucleotides BPHYT_RS03030 and BPHYT_RS03035 overlap by 4 nucleotides
BPHYT_RS03020: BPHYT_RS03020 - hypothetical protein, at 672,614 to 673,414
_RS03020
BPHYT_RS03025: BPHYT_RS03025 - methyl-accepting chemotaxis protein, at 673,714 to 675,363
_RS03025
BPHYT_RS03030: BPHYT_RS03030 - cytochrome C, at 675,435 to 676,244
_RS03030
BPHYT_RS03035: BPHYT_RS03035 - cytochrome C oxidase subunit I, at 676,241 to 677,866
_RS03035
Position (kb) 673
674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 672.894 kb on + strand, within BPHYT_RS03020 at 673.031 kb on + strand, within BPHYT_RS03020 at 673.032 kb on - strand, within BPHYT_RS03020 at 673.185 kb on + strand, within BPHYT_RS03020 at 673.403 kb on + strand at 673.427 kb on + strand at 673.512 kb on + strand at 673.523 kb on - strand at 673.533 kb on - strand at 673.560 kb on - strand at 673.589 kb on + strand at 673.590 kb on - strand at 673.590 kb on - strand at 673.591 kb on + strand at 673.592 kb on - strand at 673.592 kb on - strand at 673.674 kb on - strand at 673.843 kb on + strand at 673.844 kb on - strand at 673.844 kb on - strand at 673.924 kb on + strand, within BPHYT_RS03025 at 674.192 kb on - strand, within BPHYT_RS03025 at 674.541 kb on + strand, within BPHYT_RS03025 at 674.596 kb on - strand at 674.842 kb on - strand, within BPHYT_RS03025 at 675.361 kb on + strand at 675.361 kb on + strand at 675.365 kb on - strand at 675.437 kb on - strand at 675.451 kb on + strand at 675.452 kb on - strand at 675.455 kb on - strand at 675.527 kb on + strand, within BPHYT_RS03030 at 675.527 kb on + strand, within BPHYT_RS03030 at 675.755 kb on - strand, within BPHYT_RS03030 at 675.860 kb on - strand, within BPHYT_RS03030 at 675.860 kb on - strand, within BPHYT_RS03030 at 675.918 kb on + strand, within BPHYT_RS03030 at 675.919 kb on - strand, within BPHYT_RS03030 at 676.058 kb on - strand, within BPHYT_RS03030 at 676.156 kb on - strand, within BPHYT_RS03030 at 676.317 kb on + strand at 676.317 kb on + strand at 676.318 kb on - strand at 676.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 672,894 + BPHYT_RS03020 0.35 -0.7 673,031 + BPHYT_RS03020 0.52 +0.9 673,032 - BPHYT_RS03020 0.52 +0.6 673,185 + BPHYT_RS03020 0.71 -0.2 673,403 + +2.4 673,427 + -0.7 673,512 + -3.3 673,523 - -1.1 673,533 - -0.1 673,560 - -0.4 673,589 + -0.6 673,590 - +0.9 673,590 - +0.6 673,591 + +0.4 673,592 - +0.1 673,592 - -0.0 673,674 - +0.9 673,843 + -0.1 673,844 - -0.5 673,844 - -1.5 673,924 + BPHYT_RS03025 0.13 -0.3 674,192 - BPHYT_RS03025 0.29 -0.1 674,541 + BPHYT_RS03025 0.50 +1.4 674,596 - +0.5 674,842 - BPHYT_RS03025 0.68 -2.1 675,361 + +1.3 675,361 + +1.0 675,365 - -0.0 675,437 - -0.1 675,451 + +1.9 675,452 - +0.0 675,455 - -0.6 675,527 + BPHYT_RS03030 0.11 +0.2 675,527 + BPHYT_RS03030 0.11 -1.0 675,755 - BPHYT_RS03030 0.40 -2.0 675,860 - BPHYT_RS03030 0.52 -0.4 675,860 - BPHYT_RS03030 0.52 +1.1 675,918 + BPHYT_RS03030 0.60 +0.3 675,919 - BPHYT_RS03030 0.60 +0.2 676,058 - BPHYT_RS03030 0.77 -0.2 676,156 - BPHYT_RS03030 0.89 -0.5 676,317 + +0.5 676,317 + +0.2 676,318 - +1.3 676,318 - -0.2
Or see this region's nucleotide sequence