Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03005 and BPHYT_RS03010 are separated by 39 nucleotides BPHYT_RS03010 and BPHYT_RS03015 are separated by 34 nucleotides BPHYT_RS03015 and BPHYT_RS03020 are separated by 14 nucleotides
BPHYT_RS03005: BPHYT_RS03005 - CoA transferase, at 669,764 to 670,954
_RS03005
BPHYT_RS03010: BPHYT_RS03010 - GntR family transcriptional regulator, at 670,994 to 671,752
_RS03010
BPHYT_RS03015: BPHYT_RS03015 - aldolase, at 671,787 to 672,599
_RS03015
BPHYT_RS03020: BPHYT_RS03020 - hypothetical protein, at 672,614 to 673,414
_RS03020
Position (kb) 671
672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 670.953 kb on - strand at 671.033 kb on + strand at 671.033 kb on + strand at 671.285 kb on + strand, within BPHYT_RS03010 at 671.287 kb on + strand, within BPHYT_RS03010 at 671.287 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.452 kb on + strand, within BPHYT_RS03010 at 671.452 kb on + strand, within BPHYT_RS03010 at 671.510 kb on + strand, within BPHYT_RS03010 at 671.714 kb on + strand at 671.714 kb on + strand at 671.715 kb on - strand at 671.715 kb on - strand at 671.802 kb on + strand at 671.803 kb on - strand at 672.291 kb on + strand, within BPHYT_RS03015 at 672.602 kb on + strand at 672.602 kb on + strand at 672.705 kb on + strand, within BPHYT_RS03020 at 672.705 kb on + strand, within BPHYT_RS03020 at 672.705 kb on + strand, within BPHYT_RS03020 at 672.706 kb on - strand, within BPHYT_RS03020 at 672.706 kb on - strand, within BPHYT_RS03020 at 672.894 kb on + strand, within BPHYT_RS03020 at 673.031 kb on + strand, within BPHYT_RS03020 at 673.032 kb on - strand, within BPHYT_RS03020 at 673.185 kb on + strand, within BPHYT_RS03020 at 673.403 kb on + strand at 673.427 kb on + strand at 673.512 kb on + strand at 673.523 kb on - strand at 673.533 kb on - strand at 673.560 kb on - strand at 673.589 kb on + strand at 673.590 kb on - strand at 673.590 kb on - strand at 673.591 kb on + strand at 673.592 kb on - strand at 673.592 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 670,953 - +0.7 671,033 + +0.2 671,033 + +0.4 671,285 + BPHYT_RS03010 0.38 -0.2 671,287 + BPHYT_RS03010 0.39 -0.1 671,287 + BPHYT_RS03010 0.39 +0.6 671,450 + BPHYT_RS03010 0.60 -0.2 671,450 + BPHYT_RS03010 0.60 -1.1 671,450 + BPHYT_RS03010 0.60 +1.4 671,450 + BPHYT_RS03010 0.60 -1.0 671,451 - BPHYT_RS03010 0.60 -0.1 671,451 - BPHYT_RS03010 0.60 -0.2 671,451 - BPHYT_RS03010 0.60 +0.1 671,451 - BPHYT_RS03010 0.60 -3.1 671,452 + BPHYT_RS03010 0.60 -0.3 671,452 + BPHYT_RS03010 0.60 +1.2 671,510 + BPHYT_RS03010 0.68 -0.6 671,714 + -1.3 671,714 + -0.6 671,715 - -0.8 671,715 - -1.0 671,802 + -0.1 671,803 - -0.1 672,291 + BPHYT_RS03015 0.62 +1.4 672,602 + -1.5 672,602 + -0.4 672,705 + BPHYT_RS03020 0.11 -1.8 672,705 + BPHYT_RS03020 0.11 -2.2 672,705 + BPHYT_RS03020 0.11 -0.9 672,706 - BPHYT_RS03020 0.11 -0.6 672,706 - BPHYT_RS03020 0.11 -1.7 672,894 + BPHYT_RS03020 0.35 -0.7 673,031 + BPHYT_RS03020 0.52 +0.9 673,032 - BPHYT_RS03020 0.52 +0.6 673,185 + BPHYT_RS03020 0.71 -0.2 673,403 + +2.4 673,427 + -0.7 673,512 + -3.3 673,523 - -1.1 673,533 - -0.1 673,560 - -0.4 673,589 + -0.6 673,590 - +0.9 673,590 - +0.6 673,591 + +0.4 673,592 - +0.1 673,592 - -0.0
Or see this region's nucleotide sequence