Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01450 and BPHYT_RS01455 are separated by 244 nucleotides BPHYT_RS01455 and BPHYT_RS01460 are separated by 31 nucleotides
BPHYT_RS01450: BPHYT_RS01450 - DNA-binding protein, at 331,693 to 332,961
_RS01450
BPHYT_RS01455: BPHYT_RS01455 - peptide deformylase, at 333,206 to 333,709
_RS01455
BPHYT_RS01460: BPHYT_RS01460 - methionyl-tRNA formyltransferase, at 333,741 to 334,727
_RS01460
Position (kb) 333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 332.400 kb on - strand, within BPHYT_RS01450 at 332.629 kb on + strand, within BPHYT_RS01450 at 332.629 kb on + strand, within BPHYT_RS01450 at 332.629 kb on + strand, within BPHYT_RS01450 at 332.629 kb on + strand, within BPHYT_RS01450 at 332.630 kb on - strand, within BPHYT_RS01450 at 332.630 kb on - strand, within BPHYT_RS01450 at 332.630 kb on - strand, within BPHYT_RS01450 at 332.630 kb on - strand, within BPHYT_RS01450 at 332.630 kb on - strand, within BPHYT_RS01450 at 332.631 kb on + strand, within BPHYT_RS01450 at 332.631 kb on + strand, within BPHYT_RS01450 at 332.631 kb on + strand, within BPHYT_RS01450 at 332.631 kb on + strand, within BPHYT_RS01450 at 332.631 kb on + strand, within BPHYT_RS01450 at 332.631 kb on + strand, within BPHYT_RS01450 at 332.631 kb on + strand, within BPHYT_RS01450 at 332.631 kb on + strand, within BPHYT_RS01450 at 332.631 kb on + strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.632 kb on - strand, within BPHYT_RS01450 at 332.633 kb on + strand, within BPHYT_RS01450 at 332.633 kb on + strand, within BPHYT_RS01450 at 332.634 kb on - strand, within BPHYT_RS01450 at 332.634 kb on - strand, within BPHYT_RS01450 at 332.634 kb on - strand, within BPHYT_RS01450 at 332.635 kb on + strand, within BPHYT_RS01450 at 332.635 kb on + strand, within BPHYT_RS01450 at 332.636 kb on - strand, within BPHYT_RS01450 at 332.807 kb on - strand, within BPHYT_RS01450 at 332.979 kb on - strand at 332.979 kb on - strand at 332.979 kb on - strand at 332.979 kb on - strand at 333.111 kb on + strand at 333.111 kb on + strand at 333.111 kb on + strand at 333.111 kb on + strand at 333.112 kb on - strand at 333.112 kb on - strand at 333.112 kb on - strand at 333.112 kb on - strand at 333.112 kb on - strand at 333.112 kb on - strand at 333.112 kb on - strand at 333.112 kb on - strand at 333.112 kb on - strand at 333.213 kb on + strand at 333.644 kb on + strand, within BPHYT_RS01455 at 333.707 kb on + strand at 333.707 kb on + strand at 333.707 kb on + strand at 333.707 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 332,400 - BPHYT_RS01450 0.56 +0.1 332,629 + BPHYT_RS01450 0.74 +0.3 332,629 + BPHYT_RS01450 0.74 -1.6 332,629 + BPHYT_RS01450 0.74 +0.3 332,629 + BPHYT_RS01450 0.74 -1.3 332,630 - BPHYT_RS01450 0.74 +1.6 332,630 - BPHYT_RS01450 0.74 +0.1 332,630 - BPHYT_RS01450 0.74 -3.3 332,630 - BPHYT_RS01450 0.74 -2.3 332,630 - BPHYT_RS01450 0.74 -0.1 332,631 + BPHYT_RS01450 0.74 +0.8 332,631 + BPHYT_RS01450 0.74 -0.7 332,631 + BPHYT_RS01450 0.74 +0.6 332,631 + BPHYT_RS01450 0.74 -0.3 332,631 + BPHYT_RS01450 0.74 +1.2 332,631 + BPHYT_RS01450 0.74 -0.3 332,631 + BPHYT_RS01450 0.74 -2.0 332,631 + BPHYT_RS01450 0.74 -0.5 332,631 + BPHYT_RS01450 0.74 -1.3 332,632 - BPHYT_RS01450 0.74 -1.1 332,632 - BPHYT_RS01450 0.74 +0.4 332,632 - BPHYT_RS01450 0.74 -0.3 332,632 - BPHYT_RS01450 0.74 -0.4 332,632 - BPHYT_RS01450 0.74 -2.7 332,632 - BPHYT_RS01450 0.74 -1.1 332,632 - BPHYT_RS01450 0.74 +0.3 332,632 - BPHYT_RS01450 0.74 -2.6 332,632 - BPHYT_RS01450 0.74 -0.1 332,632 - BPHYT_RS01450 0.74 +0.3 332,633 + BPHYT_RS01450 0.74 -1.6 332,633 + BPHYT_RS01450 0.74 +0.1 332,634 - BPHYT_RS01450 0.74 -0.5 332,634 - BPHYT_RS01450 0.74 +0.6 332,634 - BPHYT_RS01450 0.74 -0.7 332,635 + BPHYT_RS01450 0.74 -3.6 332,635 + BPHYT_RS01450 0.74 -0.8 332,636 - BPHYT_RS01450 0.74 -0.6 332,807 - BPHYT_RS01450 0.88 -0.4 332,979 - -1.0 332,979 - -0.3 332,979 - +1.0 332,979 - +0.1 333,111 + -0.3 333,111 + +0.4 333,111 + -0.1 333,111 + +1.4 333,112 - +0.3 333,112 - +0.0 333,112 - -2.0 333,112 - +1.1 333,112 - -1.3 333,112 - -0.4 333,112 - -0.3 333,112 - -0.4 333,112 - -1.5 333,213 + +3.8 333,644 + BPHYT_RS01455 0.87 +2.8 333,707 + -0.5 333,707 + -0.9 333,707 + -0.7 333,707 + +0.1
Or see this region's nucleotide sequence