Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01225 and BPHYT_RS01230 are separated by 272 nucleotides BPHYT_RS01230 and BPHYT_RS01235 are separated by 461 nucleotides BPHYT_RS01235 and BPHYT_RS01240 are separated by 196 nucleotides
BPHYT_RS01225: BPHYT_RS01225 - hypothetical protein, at 282,860 to 283,738
_RS01225
BPHYT_RS01230: BPHYT_RS01230 - DNA-binding protein, at 284,011 to 284,307
_RS01230
BPHYT_RS01235: BPHYT_RS01235 - hypothetical protein, at 284,769 to 285,008
_RS01235
BPHYT_RS01240: BPHYT_RS01240 - hypothetical protein, at 285,205 to 285,423
_RS01240
Position (kb) 284
285 Strain fitness (log2 ratio) -1
0
1 at 283.102 kb on + strand, within BPHYT_RS01225 at 283.102 kb on + strand, within BPHYT_RS01225 at 283.466 kb on + strand, within BPHYT_RS01225 at 283.494 kb on - strand, within BPHYT_RS01225 at 283.530 kb on + strand, within BPHYT_RS01225 at 283.531 kb on - strand, within BPHYT_RS01225 at 283.531 kb on - strand, within BPHYT_RS01225 at 283.649 kb on - strand, within BPHYT_RS01225 at 283.663 kb on - strand at 283.752 kb on + strand at 283.752 kb on + strand at 283.919 kb on - strand at 284.123 kb on - strand, within BPHYT_RS01230 at 284.189 kb on + strand, within BPHYT_RS01230 at 284.190 kb on - strand, within BPHYT_RS01230 at 284.227 kb on - strand, within BPHYT_RS01230 at 284.368 kb on + strand at 284.369 kb on - strand at 284.434 kb on + strand at 284.808 kb on + strand, within BPHYT_RS01235 at 284.809 kb on - strand, within BPHYT_RS01235 at 285.304 kb on - strand, within BPHYT_RS01240
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 283,102 + BPHYT_RS01225 0.28 -0.2 283,102 + BPHYT_RS01225 0.28 +1.0 283,466 + BPHYT_RS01225 0.69 +0.2 283,494 - BPHYT_RS01225 0.72 +1.0 283,530 + BPHYT_RS01225 0.76 +0.2 283,531 - BPHYT_RS01225 0.76 +0.1 283,531 - BPHYT_RS01225 0.76 -0.0 283,649 - BPHYT_RS01225 0.90 -0.1 283,663 - +1.1 283,752 + +0.4 283,752 + -0.0 283,919 - +0.6 284,123 - BPHYT_RS01230 0.38 +0.4 284,189 + BPHYT_RS01230 0.60 +1.7 284,190 - BPHYT_RS01230 0.60 -0.0 284,227 - BPHYT_RS01230 0.73 -0.5 284,368 + +0.2 284,369 - +0.9 284,434 + -0.8 284,808 + BPHYT_RS01235 0.16 +0.0 284,809 - BPHYT_RS01235 0.17 -0.0 285,304 - BPHYT_RS01240 0.45 -0.9
Or see this region's nucleotide sequence