Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00025

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
5,866	+				-0.5
5,867	-				-0.1
5,887	-				-0.3
5,888	+				-1.6
6,020	+				-0.8
6,021	-				-0.1
6,055	+				+0.1
6,056	-				-0.4
6,056	-				+1.1
6,056	-				+0.3
6,056	-				+0.4
6,056	-				-0.1
6,058	+				-0.9
6,059	-				+0.9
6,063	+				+0.1
6,182	+		BPHYT_RS00020	0.51	+1.7
6,183	-		BPHYT_RS00020	0.52	+0.1
6,274	+		BPHYT_RS00020	0.87	+0.1
6,275	-		BPHYT_RS00020	0.88	+1.6
6,414	+				+0.3
6,414	+				-0.8
6,414	+				-0.8
6,464	+				-0.6
6,465	-				+0.6
6,668	-		BPHYT_RS00025	0.65	-0.3
6,701	-		BPHYT_RS00025	0.75	-0.4
6,703	+		BPHYT_RS00025	0.76	-2.3
6,703	+		BPHYT_RS00025	0.76	+0.1
6,703	+		BPHYT_RS00025	0.76	-1.1
6,704	-		BPHYT_RS00025	0.76	-0.8
6,749	-		BPHYT_RS00025	0.89	-1.4
6,783	+				+1.3
6,784	-				+0.6
6,784	-				+0.5
6,886	-				-3.8
6,886	-				+0.6
6,891	+				-0.1
6,892	-				+1.2
6,892	-				+0.8
6,892	-				-0.3
7,041	-				-0.0
7,064	-				-0.2
7,146	+				-1.4
7,147	-				-1.2
7,147	-				+0.7
7,147	-				-2.0
7,197	-				+1.1
7,237	-				-1.7
7,257	+				+1.6
7,258	-				+2.0
7,276	+				+0.9
7,301	+				-2.4
7,301	+				-0.5
7,301	+				-0.3
7,302	-				+0.2
7,302	-				-1.3
7,302	-				+0.2
7,323	-				-0.5
7,340	+				+1.9
7,396	-				-1.2
7,435	-				-0.2
7,456	-				+0.0
7,618	-				+1.1
7,634	+				+0.1
7,748	+				+1.2
7,749	-				-2.0