Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36430 and BPHYT_RS36435 overlap by 14 nucleotides BPHYT_RS36435 and BPHYT_RS36440 are separated by 657 nucleotides BPHYT_RS36440 and BPHYT_RS36445 are separated by 163 nucleotides BPHYT_RS36445 and BPHYT_RS36450 are separated by 39 nucleotides
BPHYT_RS36430: BPHYT_RS36430 - hypothetical protein, at 99,315 to 99,608
_RS36430
BPHYT_RS36435: BPHYT_RS36435 - hypothetical protein, at 99,595 to 99,933
_RS36435
BPHYT_RS36440: BPHYT_RS36440 - hypothetical protein, at 100,591 to 100,908
_RS36440
BPHYT_RS36445: BPHYT_RS36445 - hypothetical protein, at 101,072 to 101,320
_RS36445
BPHYT_RS36450: BPHYT_RS36450 - hypothetical protein, at 101,360 to 102,559
_RS36450
Position (kb) 100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 99.639 kb on - strand, within BPHYT_RS36435 at 99.722 kb on + strand, within BPHYT_RS36435 at 100.402 kb on + strand at 100.778 kb on - strand, within BPHYT_RS36440 at 100.781 kb on - strand, within BPHYT_RS36440 at 100.823 kb on - strand, within BPHYT_RS36440 at 100.956 kb on - strand at 100.956 kb on - strand at 101.558 kb on - strand, within BPHYT_RS36450 at 101.558 kb on - strand, within BPHYT_RS36450 at 101.558 kb on - strand, within BPHYT_RS36450 at 101.558 kb on - strand, within BPHYT_RS36450 at 101.636 kb on - strand, within BPHYT_RS36450
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 99,639 - BPHYT_RS36435 0.13 +0.0 99,722 + BPHYT_RS36435 0.37 +1.3 100,402 + +0.2 100,778 - BPHYT_RS36440 0.59 -2.8 100,781 - BPHYT_RS36440 0.60 +0.3 100,823 - BPHYT_RS36440 0.73 -0.7 100,956 - -0.5 100,956 - -0.5 101,558 - BPHYT_RS36450 0.17 -0.8 101,558 - BPHYT_RS36450 0.17 -0.0 101,558 - BPHYT_RS36450 0.17 -0.3 101,558 - BPHYT_RS36450 0.17 +1.2 101,636 - BPHYT_RS36450 0.23 -1.4
Or see this region's nucleotide sequence