Experiment: Vanillic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01250 and PFLU_RS01255 overlap by 4 nucleotides PFLU_RS01255 and PFLU_RS01260 are separated by 17 nucleotides PFLU_RS01260 and PFLU_RS01265 are separated by 269 nucleotides
PFLU_RS01250: PFLU_RS01250 - taurine ABC transporter permease TauC, at 277,836 to 278,672
_RS01250
PFLU_RS01255: PFLU_RS01255 - taurine ABC transporter ATP-binding subunit, at 278,669 to 279,448
_RS01255
PFLU_RS01260: PFLU_RS01260 - taurine ABC transporter substrate-binding protein, at 279,466 to 280,443
_RS01260
PFLU_RS01265: PFLU_RS01265 - glutamate--cysteine ligase, at 280,713 to 282,296
_RS01265
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.511 kb on + strand, within PFLU_RS01250 at 278.511 kb on + strand, within PFLU_RS01250 at 278.511 kb on + strand, within PFLU_RS01250 at 278.512 kb on - strand, within PFLU_RS01250 at 278.512 kb on - strand, within PFLU_RS01250 at 278.512 kb on - strand, within PFLU_RS01250 at 278.594 kb on + strand at 278.594 kb on + strand at 278.595 kb on - strand at 278.595 kb on - strand at 278.662 kb on + strand at 278.662 kb on + strand at 278.663 kb on - strand at 278.663 kb on - strand at 278.663 kb on - strand at 278.701 kb on + strand at 278.701 kb on + strand at 278.701 kb on + strand at 278.702 kb on - strand at 278.702 kb on - strand at 278.798 kb on + strand, within PFLU_RS01255 at 278.798 kb on + strand, within PFLU_RS01255 at 278.799 kb on - strand, within PFLU_RS01255 at 278.799 kb on - strand, within PFLU_RS01255 at 278.858 kb on + strand, within PFLU_RS01255 at 278.859 kb on - strand, within PFLU_RS01255 at 278.990 kb on + strand, within PFLU_RS01255 at 278.990 kb on + strand, within PFLU_RS01255 at 278.990 kb on + strand, within PFLU_RS01255 at 278.991 kb on - strand, within PFLU_RS01255 at 279.061 kb on + strand, within PFLU_RS01255 at 279.061 kb on + strand, within PFLU_RS01255 at 279.061 kb on + strand, within PFLU_RS01255 at 279.062 kb on - strand, within PFLU_RS01255 at 279.176 kb on + strand, within PFLU_RS01255 at 279.176 kb on + strand, within PFLU_RS01255 at 279.177 kb on - strand, within PFLU_RS01255 at 279.177 kb on - strand, within PFLU_RS01255 at 279.177 kb on - strand, within PFLU_RS01255 at 279.177 kb on - strand, within PFLU_RS01255 at 279.177 kb on - strand, within PFLU_RS01255 at 279.177 kb on - strand, within PFLU_RS01255 at 279.411 kb on + strand at 279.411 kb on + strand at 279.412 kb on - strand at 279.412 kb on - strand at 279.412 kb on - strand at 279.412 kb on - strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.437 kb on + strand at 279.438 kb on - strand at 279.438 kb on - strand at 279.438 kb on - strand at 279.438 kb on - strand at 279.494 kb on + strand at 279.494 kb on + strand at 279.494 kb on + strand at 279.494 kb on + strand at 279.494 kb on + strand at 279.495 kb on - strand at 279.495 kb on - strand at 279.495 kb on - strand at 279.495 kb on - strand at 279.495 kb on - strand at 279.503 kb on + strand at 279.738 kb on - strand, within PFLU_RS01260 at 279.750 kb on + strand, within PFLU_RS01260 at 279.750 kb on + strand, within PFLU_RS01260 at 279.750 kb on + strand, within PFLU_RS01260 at 279.911 kb on + strand, within PFLU_RS01260 at 279.911 kb on + strand, within PFLU_RS01260 at 279.911 kb on + strand, within PFLU_RS01260 at 279.911 kb on + strand, within PFLU_RS01260 at 279.911 kb on + strand, within PFLU_RS01260 at 279.911 kb on + strand, within PFLU_RS01260 at 279.911 kb on + strand, within PFLU_RS01260 at 279.912 kb on - strand, within PFLU_RS01260 at 279.912 kb on - strand, within PFLU_RS01260 at 279.912 kb on - strand, within PFLU_RS01260 at 279.912 kb on - strand, within PFLU_RS01260 at 279.912 kb on - strand, within PFLU_RS01260 at 279.912 kb on - strand, within PFLU_RS01260 at 280.028 kb on + strand, within PFLU_RS01260 at 280.028 kb on + strand, within PFLU_RS01260 at 280.028 kb on + strand, within PFLU_RS01260 at 280.028 kb on + strand, within PFLU_RS01260 at 280.029 kb on - strand, within PFLU_RS01260 at 280.029 kb on - strand, within PFLU_RS01260 at 280.219 kb on + strand, within PFLU_RS01260 at 280.219 kb on + strand, within PFLU_RS01260 at 280.219 kb on + strand, within PFLU_RS01260 at 280.219 kb on + strand, within PFLU_RS01260 at 280.220 kb on - strand, within PFLU_RS01260 at 280.304 kb on + strand, within PFLU_RS01260 at 280.304 kb on + strand, within PFLU_RS01260 at 280.432 kb on + strand at 280.492 kb on - strand at 280.622 kb on + strand at 280.622 kb on + strand at 280.623 kb on - strand at 280.623 kb on - strand at 280.623 kb on - strand at 280.623 kb on - strand at 280.689 kb on + strand at 280.689 kb on + strand at 280.689 kb on + strand at 280.689 kb on + strand at 280.689 kb on + strand at 280.689 kb on + strand at 280.689 kb on + strand at 280.689 kb on + strand at 280.694 kb on + strand at 280.694 kb on + strand at 280.694 kb on + strand at 280.694 kb on + strand at 280.694 kb on + strand at 280.694 kb on + strand at 280.694 kb on + strand at 280.694 kb on + strand at 280.699 kb on + strand at 280.700 kb on - strand at 280.715 kb on - strand at 280.715 kb on - strand at 280.715 kb on - strand at 280.744 kb on + strand at 280.744 kb on + strand at 280.745 kb on - strand at 280.745 kb on - strand at 280.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillic Acid (C) remove 278,511 + PFLU_RS01250 0.81 +0.6 278,511 + PFLU_RS01250 0.81 +0.9 278,511 + PFLU_RS01250 0.81 +0.1 278,512 - PFLU_RS01250 0.81 -0.4 278,512 - PFLU_RS01250 0.81 +1.2 278,512 - PFLU_RS01250 0.81 -1.0 278,594 + +0.3 278,594 + -1.1 278,595 - -2.2 278,595 - -0.9 278,662 + +2.4 278,662 + -0.9 278,663 - -0.2 278,663 - +0.6 278,663 - +0.4 278,701 + +0.8 278,701 + -1.3 278,701 + -1.1 278,702 - -0.8 278,702 - -1.1 278,798 + PFLU_RS01255 0.17 -0.6 278,798 + PFLU_RS01255 0.17 -1.8 278,799 - PFLU_RS01255 0.17 -0.4 278,799 - PFLU_RS01255 0.17 -0.1 278,858 + PFLU_RS01255 0.24 -1.1 278,859 - PFLU_RS01255 0.24 -0.2 278,990 + PFLU_RS01255 0.41 +0.8 278,990 + PFLU_RS01255 0.41 -1.2 278,990 + PFLU_RS01255 0.41 -0.2 278,991 - PFLU_RS01255 0.41 +0.4 279,061 + PFLU_RS01255 0.50 +0.7 279,061 + PFLU_RS01255 0.50 -0.1 279,061 + PFLU_RS01255 0.50 +1.4 279,062 - PFLU_RS01255 0.50 +1.3 279,176 + PFLU_RS01255 0.65 +0.7 279,176 + PFLU_RS01255 0.65 +0.8 279,177 - PFLU_RS01255 0.65 -0.7 279,177 - PFLU_RS01255 0.65 -0.9 279,177 - PFLU_RS01255 0.65 +0.4 279,177 - PFLU_RS01255 0.65 -0.1 279,177 - PFLU_RS01255 0.65 +0.9 279,177 - PFLU_RS01255 0.65 -1.9 279,411 + -0.3 279,411 + -0.0 279,412 - +0.1 279,412 - +0.8 279,412 - +0.2 279,412 - +1.7 279,437 + -1.4 279,437 + +0.4 279,437 + -1.7 279,437 + +0.8 279,437 + -0.4 279,437 + +1.1 279,437 + -1.9 279,437 + +0.1 279,437 + -0.8 279,437 + -0.2 279,437 + +0.9 279,437 + -1.9 279,438 - -0.9 279,438 - +0.3 279,438 - -0.8 279,438 - -0.3 279,494 + -1.6 279,494 + +0.2 279,494 + +0.8 279,494 + +0.9 279,494 + -0.2 279,495 - +0.2 279,495 - +1.4 279,495 - +0.2 279,495 - -0.5 279,495 - -0.8 279,503 + +0.0 279,738 - PFLU_RS01260 0.28 +0.1 279,750 + PFLU_RS01260 0.29 -2.3 279,750 + PFLU_RS01260 0.29 +0.2 279,750 + PFLU_RS01260 0.29 -0.7 279,911 + PFLU_RS01260 0.46 -0.3 279,911 + PFLU_RS01260 0.46 +1.2 279,911 + PFLU_RS01260 0.46 -1.8 279,911 + PFLU_RS01260 0.46 -1.1 279,911 + PFLU_RS01260 0.46 +2.0 279,911 + PFLU_RS01260 0.46 +0.7 279,911 + PFLU_RS01260 0.46 -0.7 279,912 - PFLU_RS01260 0.46 -1.1 279,912 - PFLU_RS01260 0.46 +0.8 279,912 - PFLU_RS01260 0.46 -0.6 279,912 - PFLU_RS01260 0.46 +1.3 279,912 - PFLU_RS01260 0.46 -0.5 279,912 - PFLU_RS01260 0.46 -2.1 280,028 + PFLU_RS01260 0.57 -0.0 280,028 + PFLU_RS01260 0.57 -0.4 280,028 + PFLU_RS01260 0.57 -0.8 280,028 + PFLU_RS01260 0.57 -1.3 280,029 - PFLU_RS01260 0.58 +1.7 280,029 - PFLU_RS01260 0.58 +0.3 280,219 + PFLU_RS01260 0.77 -1.4 280,219 + PFLU_RS01260 0.77 +0.2 280,219 + PFLU_RS01260 0.77 +1.3 280,219 + PFLU_RS01260 0.77 -1.4 280,220 - PFLU_RS01260 0.77 -2.3 280,304 + PFLU_RS01260 0.86 +1.1 280,304 + PFLU_RS01260 0.86 +0.0 280,432 + +1.4 280,492 - -1.1 280,622 + +0.8 280,622 + +1.2 280,623 - +1.5 280,623 - -0.5 280,623 - +0.8 280,623 - -0.8 280,689 + -2.1 280,689 + -0.8 280,689 + -1.1 280,689 + +0.6 280,689 + +0.9 280,689 + -0.2 280,689 + +0.1 280,689 + +0.2 280,694 + +0.5 280,694 + -1.5 280,694 + +1.2 280,694 + -0.8 280,694 + -1.0 280,694 + +0.1 280,694 + -0.2 280,694 + +0.1 280,699 + -0.1 280,700 - +0.2 280,715 - +1.1 280,715 - -0.4 280,715 - -0.2 280,744 + +0.1 280,744 + -0.5 280,745 - +0.2 280,745 - +0.2 280,745 - -2.4
Or see this region's nucleotide sequence