Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS00640

Experiment: Vanillic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00635 and PFLU_RS00640 are separated by 14 nucleotidesPFLU_RS00640 and PFLU_RS00645 are separated by 1 nucleotidesPFLU_RS00645 and PFLU_RS00650 are separated by 11 nucleotides PFLU_RS00635: PFLU_RS00635 - TauD/TfdA family dioxygenase, at 134,475 to 135,368 _RS00635 PFLU_RS00640: PFLU_RS00640 - ABC transporter substrate-binding protein, at 135,383 to 136,408 _RS00640 PFLU_RS00645: PFLU_RS00645 - ABC transporter ATP-binding protein, at 136,410 to 137,261 _RS00645 PFLU_RS00650: PFLU_RS00650 - ABC transporter permease, at 137,273 to 138,121 _RS00650 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 134.397 kb on + strandat 134.401 kb on + strandat 134.402 kb on - strandat 134.433 kb on - strandat 134.439 kb on - strandat 134.490 kb on - strandat 134.490 kb on - strandat 134.841 kb on + strand, within PFLU_RS00635at 134.841 kb on + strand, within PFLU_RS00635at 134.841 kb on + strand, within PFLU_RS00635at 134.841 kb on + strand, within PFLU_RS00635at 134.841 kb on + strand, within PFLU_RS00635at 134.841 kb on + strand, within PFLU_RS00635at 134.842 kb on - strand, within PFLU_RS00635at 134.842 kb on - strand, within PFLU_RS00635at 134.842 kb on - strand, within PFLU_RS00635at 134.842 kb on - strand, within PFLU_RS00635at 134.842 kb on - strand, within PFLU_RS00635at 134.842 kb on - strand, within PFLU_RS00635at 134.842 kb on - strand, within PFLU_RS00635at 134.842 kb on - strand, within PFLU_RS00635at 134.843 kb on + strand, within PFLU_RS00635at 134.994 kb on + strand, within PFLU_RS00635at 134.994 kb on + strand, within PFLU_RS00635at 134.994 kb on + strand, within PFLU_RS00635at 134.995 kb on - strand, within PFLU_RS00635at 134.995 kb on - strand, within PFLU_RS00635at 135.204 kb on + strand, within PFLU_RS00635at 135.205 kb on - strand, within PFLU_RS00635at 135.205 kb on - strand, within PFLU_RS00635at 135.205 kb on - strand, within PFLU_RS00635at 135.205 kb on - strand, within PFLU_RS00635at 135.205 kb on - strand, within PFLU_RS00635at 135.234 kb on + strand, within PFLU_RS00635at 135.234 kb on + strand, within PFLU_RS00635at 135.234 kb on + strand, within PFLU_RS00635at 135.235 kb on - strand, within PFLU_RS00635at 135.235 kb on - strand, within PFLU_RS00635at 135.235 kb on - strand, within PFLU_RS00635at 135.521 kb on + strand, within PFLU_RS00640at 135.521 kb on + strand, within PFLU_RS00640at 135.522 kb on - strand, within PFLU_RS00640at 135.522 kb on - strand, within PFLU_RS00640at 135.528 kb on + strand, within PFLU_RS00640at 135.529 kb on - strand, within PFLU_RS00640at 135.540 kb on + strand, within PFLU_RS00640at 135.540 kb on + strand, within PFLU_RS00640at 135.540 kb on + strand, within PFLU_RS00640at 135.541 kb on - strand, within PFLU_RS00640at 135.541 kb on - strand, within PFLU_RS00640at 135.566 kb on + strand, within PFLU_RS00640at 135.566 kb on + strand, within PFLU_RS00640at 135.566 kb on + strand, within PFLU_RS00640at 135.661 kb on + strand, within PFLU_RS00640at 135.758 kb on + strand, within PFLU_RS00640at 135.761 kb on + strand, within PFLU_RS00640at 135.761 kb on + strand, within PFLU_RS00640at 135.761 kb on + strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.869 kb on + strand, within PFLU_RS00640at 135.870 kb on - strand, within PFLU_RS00640at 135.870 kb on - strand, within PFLU_RS00640at 135.870 kb on - strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.921 kb on - strand, within PFLU_RS00640at 135.921 kb on - strand, within PFLU_RS00640at 135.921 kb on - strand, within PFLU_RS00640at 135.921 kb on - strand, within PFLU_RS00640at 135.921 kb on - strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.133 kb on + strand, within PFLU_RS00640at 136.133 kb on + strand, within PFLU_RS00640at 136.133 kb on + strand, within PFLU_RS00640at 136.133 kb on + strand, within PFLU_RS00640at 136.134 kb on - strand, within PFLU_RS00640at 136.134 kb on - strand, within PFLU_RS00640at 136.134 kb on - strand, within PFLU_RS00640at 136.134 kb on - strand, within PFLU_RS00640at 136.134 kb on - strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.304 kb on + strand, within PFLU_RS00640at 136.304 kb on + strand, within PFLU_RS00640at 136.370 kb on + strandat 136.371 kb on - strandat 136.371 kb on - strandat 136.371 kb on - strandat 136.371 kb on - strandat 136.494 kb on + strandat 136.564 kb on - strand, within PFLU_RS00645at 136.564 kb on - strand, within PFLU_RS00645at 136.592 kb on + strand, within PFLU_RS00645at 136.625 kb on + strand, within PFLU_RS00645at 136.691 kb on + strand, within PFLU_RS00645at 136.815 kb on + strand, within PFLU_RS00645at 136.815 kb on + strand, within PFLU_RS00645at 136.816 kb on - strand, within PFLU_RS00645at 136.816 kb on - strand, within PFLU_RS00645at 136.816 kb on - strand, within PFLU_RS00645at 136.816 kb on - strand, within PFLU_RS00645at 137.133 kb on + strand, within PFLU_RS00645at 137.133 kb on + strand, within PFLU_RS00645at 137.134 kb on - strand, within PFLU_RS00645at 137.257 kb on - strandat 137.285 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillic Acid (C)
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134,397 + +0.4
134,401 + -0.5
134,402 - -2.4
134,433 - -2.1
134,439 - -2.0
134,490 - -2.6
134,490 - -0.0
134,841 + PFLU_RS00635 0.41 +0.2
134,841 + PFLU_RS00635 0.41 +0.1
134,841 + PFLU_RS00635 0.41 +1.2
134,841 + PFLU_RS00635 0.41 -0.5
134,841 + PFLU_RS00635 0.41 +0.1
134,841 + PFLU_RS00635 0.41 -0.5
134,842 - PFLU_RS00635 0.41 -2.1
134,842 - PFLU_RS00635 0.41 -1.8
134,842 - PFLU_RS00635 0.41 -2.0
134,842 - PFLU_RS00635 0.41 -2.4
134,842 - PFLU_RS00635 0.41 -1.0
134,842 - PFLU_RS00635 0.41 -3.0
134,842 - PFLU_RS00635 0.41 -1.7
134,842 - PFLU_RS00635 0.41 -2.1
134,843 + PFLU_RS00635 0.41 -0.6
134,994 + PFLU_RS00635 0.58 +0.1
134,994 + PFLU_RS00635 0.58 +1.9
134,994 + PFLU_RS00635 0.58 -2.5
134,995 - PFLU_RS00635 0.58 -1.4
134,995 - PFLU_RS00635 0.58 -1.6
135,204 + PFLU_RS00635 0.82 -2.3
135,205 - PFLU_RS00635 0.82 -1.8
135,205 - PFLU_RS00635 0.82 -1.6
135,205 - PFLU_RS00635 0.82 -2.3
135,205 - PFLU_RS00635 0.82 -2.0
135,205 - PFLU_RS00635 0.82 -2.8
135,234 + PFLU_RS00635 0.85 -0.4
135,234 + PFLU_RS00635 0.85 -0.0
135,234 + PFLU_RS00635 0.85 -0.4
135,235 - PFLU_RS00635 0.85 -0.9
135,235 - PFLU_RS00635 0.85 -0.8
135,235 - PFLU_RS00635 0.85 -3.1
135,521 + PFLU_RS00640 0.13 -1.0
135,521 + PFLU_RS00640 0.13 -1.8
135,522 - PFLU_RS00640 0.14 -2.3
135,522 - PFLU_RS00640 0.14 +1.4
135,528 + PFLU_RS00640 0.14 -0.4
135,529 - PFLU_RS00640 0.14 -2.1
135,540 + PFLU_RS00640 0.15 -1.3
135,540 + PFLU_RS00640 0.15 -0.8
135,540 + PFLU_RS00640 0.15 -0.8
135,541 - PFLU_RS00640 0.15 -2.2
135,541 - PFLU_RS00640 0.15 -2.8
135,566 + PFLU_RS00640 0.18 -0.7
135,566 + PFLU_RS00640 0.18 +0.3
135,566 + PFLU_RS00640 0.18 -1.3
135,661 + PFLU_RS00640 0.27 -0.3
135,758 + PFLU_RS00640 0.37 -0.1
135,761 + PFLU_RS00640 0.37 +0.6
135,761 + PFLU_RS00640 0.37 -2.1
135,761 + PFLU_RS00640 0.37 -1.4
135,762 - PFLU_RS00640 0.37 -2.2
135,762 - PFLU_RS00640 0.37 -1.5
135,762 - PFLU_RS00640 0.37 -0.7
135,762 - PFLU_RS00640 0.37 -1.2
135,869 + PFLU_RS00640 0.47 -0.0
135,870 - PFLU_RS00640 0.47 -3.0
135,870 - PFLU_RS00640 0.47 -0.6
135,870 - PFLU_RS00640 0.47 +2.4
135,920 + PFLU_RS00640 0.52 -0.0
135,920 + PFLU_RS00640 0.52 -0.1
135,920 + PFLU_RS00640 0.52 +0.9
135,920 + PFLU_RS00640 0.52 +1.3
135,920 + PFLU_RS00640 0.52 +0.6
135,920 + PFLU_RS00640 0.52 +0.8
135,920 + PFLU_RS00640 0.52 +0.1
135,920 + PFLU_RS00640 0.52 -0.1
135,921 - PFLU_RS00640 0.52 -0.4
135,921 - PFLU_RS00640 0.52 -2.6
135,921 - PFLU_RS00640 0.52 +0.9
135,921 - PFLU_RS00640 0.52 -0.2
135,921 - PFLU_RS00640 0.52 -0.1
136,058 + PFLU_RS00640 0.66 +0.7
136,058 + PFLU_RS00640 0.66 +1.6
136,058 + PFLU_RS00640 0.66 +0.5
136,058 + PFLU_RS00640 0.66 -0.6
136,058 + PFLU_RS00640 0.66 -1.4
136,058 + PFLU_RS00640 0.66 +0.4
136,058 + PFLU_RS00640 0.66 -0.3
136,059 - PFLU_RS00640 0.66 +1.1
136,059 - PFLU_RS00640 0.66 -3.2
136,059 - PFLU_RS00640 0.66 -1.3
136,059 - PFLU_RS00640 0.66 -2.0
136,059 - PFLU_RS00640 0.66 -2.0
136,059 - PFLU_RS00640 0.66 -1.6
136,059 - PFLU_RS00640 0.66 -1.9
136,059 - PFLU_RS00640 0.66 -1.3
136,133 + PFLU_RS00640 0.73 +0.7
136,133 + PFLU_RS00640 0.73 +1.3
136,133 + PFLU_RS00640 0.73 +1.1
136,133 + PFLU_RS00640 0.73 +1.1
136,134 - PFLU_RS00640 0.73 -2.1
136,134 - PFLU_RS00640 0.73 +3.6
136,134 - PFLU_RS00640 0.73 -2.2
136,134 - PFLU_RS00640 0.73 -0.2
136,134 - PFLU_RS00640 0.73 -1.9
136,208 + PFLU_RS00640 0.80 -0.1
136,208 + PFLU_RS00640 0.80 -1.6
136,208 + PFLU_RS00640 0.80 +1.6
136,208 + PFLU_RS00640 0.80 -0.9
136,208 + PFLU_RS00640 0.80 +0.5
136,208 + PFLU_RS00640 0.80 -0.1
136,208 + PFLU_RS00640 0.80 +0.8
136,208 + PFLU_RS00640 0.80 +1.6
136,208 + PFLU_RS00640 0.80 +0.6
136,208 + PFLU_RS00640 0.80 -0.2
136,208 + PFLU_RS00640 0.80 -0.5
136,208 + PFLU_RS00640 0.80 +0.2
136,208 + PFLU_RS00640 0.80 -0.6
136,208 + PFLU_RS00640 0.80 -1.3
136,208 + PFLU_RS00640 0.80 -1.1
136,208 + PFLU_RS00640 0.80 -0.7
136,209 - PFLU_RS00640 0.81 +0.4
136,209 - PFLU_RS00640 0.81 -0.9
136,209 - PFLU_RS00640 0.81 -0.9
136,209 - PFLU_RS00640 0.81 -2.6
136,209 - PFLU_RS00640 0.81 +0.1
136,209 - PFLU_RS00640 0.81 -0.7
136,209 - PFLU_RS00640 0.81 -0.2
136,209 - PFLU_RS00640 0.81 -0.6
136,209 - PFLU_RS00640 0.81 +0.4
136,209 - PFLU_RS00640 0.81 -0.8
136,209 - PFLU_RS00640 0.81 -1.3
136,209 - PFLU_RS00640 0.81 -1.8
136,209 - PFLU_RS00640 0.81 -1.2
136,209 - PFLU_RS00640 0.81 +0.0
136,209 - PFLU_RS00640 0.81 -0.6
136,209 - PFLU_RS00640 0.81 -0.7
136,209 - PFLU_RS00640 0.81 -1.3
136,209 - PFLU_RS00640 0.81 -0.9
136,209 - PFLU_RS00640 0.81 -2.1
136,209 - PFLU_RS00640 0.81 -1.8
136,209 - PFLU_RS00640 0.81 -1.9
136,209 - PFLU_RS00640 0.81 -0.4
136,209 - PFLU_RS00640 0.81 -0.3
136,304 + PFLU_RS00640 0.90 -0.4
136,304 + PFLU_RS00640 0.90 +0.2
136,370 + -0.2
136,371 - +0.4
136,371 - -1.9
136,371 - -0.4
136,371 - +0.7
136,494 + -0.2
136,564 - PFLU_RS00645 0.18 -0.6
136,564 - PFLU_RS00645 0.18 -1.3
136,592 + PFLU_RS00645 0.21 -0.1
136,625 + PFLU_RS00645 0.25 +0.2
136,691 + PFLU_RS00645 0.33 -0.4
136,815 + PFLU_RS00645 0.48 +0.8
136,815 + PFLU_RS00645 0.48 -1.3
136,816 - PFLU_RS00645 0.48 -0.7
136,816 - PFLU_RS00645 0.48 +1.9
136,816 - PFLU_RS00645 0.48 +0.8
136,816 - PFLU_RS00645 0.48 +0.6
137,133 + PFLU_RS00645 0.85 +0.0
137,133 + PFLU_RS00645 0.85 +0.1
137,134 - PFLU_RS00645 0.85 +0.7
137,257 - +0.9
137,285 + -1.1

Or see this region's nucleotide sequence