Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19635

Experiment: Xanthosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19625 and PFLU_RS19630 are separated by 6 nucleotidesPFLU_RS19630 and PFLU_RS19635 are separated by 110 nucleotidesPFLU_RS19635 and PFLU_RS19640 are separated by 94 nucleotidesPFLU_RS19640 and PFLU_RS19645 overlap by 4 nucleotides PFLU_RS19625: PFLU_RS19625 - amino acid ABC transporter permease, at 4,443,948 to 4,444,691 _RS19625 PFLU_RS19630: PFLU_RS19630 - amino acid ABC transporter permease, at 4,444,698 to 4,445,399 _RS19630 PFLU_RS19635: PFLU_RS19635 - SDR family oxidoreductase, at 4,445,510 to 4,446,262 _RS19635 PFLU_RS19640: PFLU_RS19640 - 5-oxoprolinase subunit PxpA, at 4,446,357 to 4,447,130 _RS19640 PFLU_RS19645: PFLU_RS19645 - hypothetical protein, at 4,447,127 to 4,447,519 _RS19645 Position (kb) 4445 4446 4447Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4444.510 kb on + strand, within PFLU_RS19625at 4444.511 kb on - strand, within PFLU_RS19625at 4444.511 kb on - strand, within PFLU_RS19625at 4444.511 kb on - strand, within PFLU_RS19625at 4444.682 kb on + strandat 4444.699 kb on + strandat 4444.774 kb on + strand, within PFLU_RS19630at 4444.774 kb on + strand, within PFLU_RS19630at 4444.774 kb on + strand, within PFLU_RS19630at 4444.774 kb on + strand, within PFLU_RS19630at 4444.774 kb on + strand, within PFLU_RS19630at 4444.775 kb on - strand, within PFLU_RS19630at 4444.819 kb on + strand, within PFLU_RS19630at 4444.819 kb on + strand, within PFLU_RS19630at 4444.819 kb on + strand, within PFLU_RS19630at 4444.819 kb on + strand, within PFLU_RS19630at 4444.819 kb on + strand, within PFLU_RS19630at 4444.819 kb on + strand, within PFLU_RS19630at 4444.819 kb on + strand, within PFLU_RS19630at 4444.820 kb on - strand, within PFLU_RS19630at 4444.820 kb on - strand, within PFLU_RS19630at 4444.820 kb on - strand, within PFLU_RS19630at 4444.971 kb on + strand, within PFLU_RS19630at 4444.971 kb on + strand, within PFLU_RS19630at 4444.971 kb on + strand, within PFLU_RS19630at 4444.971 kb on + strand, within PFLU_RS19630at 4444.971 kb on + strand, within PFLU_RS19630at 4444.971 kb on + strand, within PFLU_RS19630at 4444.971 kb on + strand, within PFLU_RS19630at 4444.972 kb on - strand, within PFLU_RS19630at 4444.972 kb on - strand, within PFLU_RS19630at 4444.972 kb on - strand, within PFLU_RS19630at 4444.972 kb on - strand, within PFLU_RS19630at 4444.972 kb on - strand, within PFLU_RS19630at 4444.972 kb on - strand, within PFLU_RS19630at 4444.975 kb on + strand, within PFLU_RS19630at 4444.976 kb on - strand, within PFLU_RS19630at 4444.976 kb on - strand, within PFLU_RS19630at 4445.057 kb on - strand, within PFLU_RS19630at 4445.098 kb on + strand, within PFLU_RS19630at 4445.099 kb on - strand, within PFLU_RS19630at 4445.164 kb on + strand, within PFLU_RS19630at 4445.165 kb on - strand, within PFLU_RS19630at 4445.165 kb on - strand, within PFLU_RS19630at 4445.198 kb on + strand, within PFLU_RS19630at 4445.199 kb on - strand, within PFLU_RS19630at 4445.243 kb on + strand, within PFLU_RS19630at 4445.243 kb on + strand, within PFLU_RS19630at 4445.259 kb on + strand, within PFLU_RS19630at 4445.260 kb on - strand, within PFLU_RS19630at 4445.500 kb on + strandat 4445.520 kb on + strandat 4445.521 kb on - strandat 4445.521 kb on - strandat 4445.829 kb on + strand, within PFLU_RS19635at 4445.853 kb on + strand, within PFLU_RS19635at 4445.853 kb on + strand, within PFLU_RS19635at 4445.854 kb on - strand, within PFLU_RS19635at 4445.854 kb on - strand, within PFLU_RS19635at 4446.185 kb on + strand, within PFLU_RS19635at 4446.185 kb on + strand, within PFLU_RS19635at 4446.185 kb on + strand, within PFLU_RS19635at 4446.300 kb on + strandat 4446.358 kb on + strandat 4446.359 kb on - strandat 4446.389 kb on + strandat 4446.389 kb on + strandat 4446.389 kb on + strandat 4446.389 kb on + strandat 4446.389 kb on + strandat 4446.389 kb on + strandat 4446.389 kb on + strandat 4446.390 kb on - strandat 4446.390 kb on - strandat 4446.865 kb on + strand, within PFLU_RS19640at 4446.865 kb on + strand, within PFLU_RS19640at 4446.865 kb on + strand, within PFLU_RS19640at 4446.866 kb on - strand, within PFLU_RS19640at 4446.866 kb on - strand, within PFLU_RS19640at 4446.866 kb on - strand, within PFLU_RS19640at 4446.874 kb on + strand, within PFLU_RS19640at 4446.874 kb on + strand, within PFLU_RS19640at 4446.874 kb on + strand, within PFLU_RS19640at 4446.874 kb on + strand, within PFLU_RS19640at 4446.874 kb on + strand, within PFLU_RS19640at 4446.875 kb on - strand, within PFLU_RS19640at 4447.130 kb on + strandat 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.193 kb on + strand, within PFLU_RS19645at 4447.194 kb on - strand, within PFLU_RS19645at 4447.194 kb on - strand, within PFLU_RS19645at 4447.194 kb on - strand, within PFLU_RS19645at 4447.194 kb on - strand, within PFLU_RS19645

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine (C)
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4,444,510 + PFLU_RS19625 0.76 +2.6
4,444,511 - PFLU_RS19625 0.76 +1.5
4,444,511 - PFLU_RS19625 0.76 -1.2
4,444,511 - PFLU_RS19625 0.76 +1.3
4,444,682 + -0.3
4,444,699 + -0.5
4,444,774 + PFLU_RS19630 0.11 -2.1
4,444,774 + PFLU_RS19630 0.11 +1.4
4,444,774 + PFLU_RS19630 0.11 +4.3
4,444,774 + PFLU_RS19630 0.11 -1.0
4,444,774 + PFLU_RS19630 0.11 +0.5
4,444,775 - PFLU_RS19630 0.11 -0.8
4,444,819 + PFLU_RS19630 0.17 -1.0
4,444,819 + PFLU_RS19630 0.17 -2.1
4,444,819 + PFLU_RS19630 0.17 +0.4
4,444,819 + PFLU_RS19630 0.17 +2.0
4,444,819 + PFLU_RS19630 0.17 +0.8
4,444,819 + PFLU_RS19630 0.17 +0.2
4,444,819 + PFLU_RS19630 0.17 +0.4
4,444,820 - PFLU_RS19630 0.17 -0.2
4,444,820 - PFLU_RS19630 0.17 +0.6
4,444,820 - PFLU_RS19630 0.17 +1.8
4,444,971 + PFLU_RS19630 0.39 +0.8
4,444,971 + PFLU_RS19630 0.39 +1.4
4,444,971 + PFLU_RS19630 0.39 +3.1
4,444,971 + PFLU_RS19630 0.39 +2.8
4,444,971 + PFLU_RS19630 0.39 -1.4
4,444,971 + PFLU_RS19630 0.39 -0.2
4,444,971 + PFLU_RS19630 0.39 -2.0
4,444,972 - PFLU_RS19630 0.39 +0.8
4,444,972 - PFLU_RS19630 0.39 -0.5
4,444,972 - PFLU_RS19630 0.39 +0.9
4,444,972 - PFLU_RS19630 0.39 +1.1
4,444,972 - PFLU_RS19630 0.39 +1.7
4,444,972 - PFLU_RS19630 0.39 -1.8
4,444,975 + PFLU_RS19630 0.39 -2.9
4,444,976 - PFLU_RS19630 0.40 +0.8
4,444,976 - PFLU_RS19630 0.40 -2.5
4,445,057 - PFLU_RS19630 0.51 -0.8
4,445,098 + PFLU_RS19630 0.57 -1.7
4,445,099 - PFLU_RS19630 0.57 -1.2
4,445,164 + PFLU_RS19630 0.66 +1.8
4,445,165 - PFLU_RS19630 0.67 +0.8
4,445,165 - PFLU_RS19630 0.67 -2.0
4,445,198 + PFLU_RS19630 0.71 -1.0
4,445,199 - PFLU_RS19630 0.71 -1.8
4,445,243 + PFLU_RS19630 0.78 -2.1
4,445,243 + PFLU_RS19630 0.78 +0.1
4,445,259 + PFLU_RS19630 0.80 +3.8
4,445,260 - PFLU_RS19630 0.80 +2.9
4,445,500 + +0.3
4,445,520 + +2.4
4,445,521 - -2.0
4,445,521 - -2.2
4,445,829 + PFLU_RS19635 0.42 -2.4
4,445,853 + PFLU_RS19635 0.46 -1.0
4,445,853 + PFLU_RS19635 0.46 +1.9
4,445,854 - PFLU_RS19635 0.46 -1.4
4,445,854 - PFLU_RS19635 0.46 -1.5
4,446,185 + PFLU_RS19635 0.90 -1.2
4,446,185 + PFLU_RS19635 0.90 -2.0
4,446,185 + PFLU_RS19635 0.90 -2.0
4,446,300 + -1.0
4,446,358 + +1.9
4,446,359 - -2.0
4,446,389 + -0.5
4,446,389 + +1.4
4,446,389 + -2.9
4,446,389 + +2.5
4,446,389 + -0.2
4,446,389 + +2.0
4,446,389 + +0.5
4,446,390 - +0.5
4,446,390 - -1.6
4,446,865 + PFLU_RS19640 0.66 -2.0
4,446,865 + PFLU_RS19640 0.66 +3.5
4,446,865 + PFLU_RS19640 0.66 +0.6
4,446,866 - PFLU_RS19640 0.66 -1.5
4,446,866 - PFLU_RS19640 0.66 +0.1
4,446,866 - PFLU_RS19640 0.66 -1.4
4,446,874 + PFLU_RS19640 0.67 +2.3
4,446,874 + PFLU_RS19640 0.67 +0.5
4,446,874 + PFLU_RS19640 0.67 -1.5
4,446,874 + PFLU_RS19640 0.67 +1.4
4,446,874 + PFLU_RS19640 0.67 +0.9
4,446,875 - PFLU_RS19640 0.67 -2.5
4,447,130 + -1.9
4,447,193 + PFLU_RS19645 0.17 -2.8
4,447,193 + PFLU_RS19645 0.17 +2.7
4,447,193 + PFLU_RS19645 0.17 +1.9
4,447,193 + PFLU_RS19645 0.17 +2.4
4,447,193 + PFLU_RS19645 0.17 -1.9
4,447,193 + PFLU_RS19645 0.17 +0.6
4,447,193 + PFLU_RS19645 0.17 -1.9
4,447,193 + PFLU_RS19645 0.17 -0.8
4,447,193 + PFLU_RS19645 0.17 +1.8
4,447,193 + PFLU_RS19645 0.17 -3.2
4,447,193 + PFLU_RS19645 0.17 -1.0
4,447,193 + PFLU_RS19645 0.17 +2.2
4,447,193 + PFLU_RS19645 0.17 +3.1
4,447,193 + PFLU_RS19645 0.17 +4.4
4,447,194 - PFLU_RS19645 0.17 +1.4
4,447,194 - PFLU_RS19645 0.17 -1.7
4,447,194 - PFLU_RS19645 0.17 +3.7
4,447,194 - PFLU_RS19645 0.17 -1.0

Or see this region's nucleotide sequence